View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_17 (Length: 398)
Name: NF21245_high_17
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 48474901 - 48474607
Alignment:
| Q |
1 |
cctaccagaaccagcacaggaaagttcgcgcctcccactcatataaggaggagaggctaacagagattgttgatcaagttgaaaatcaacttgaagagat |
100 |
Q |
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| T |
48474901 |
cctaccagaaccaacacaggaaagtttgcgcctcccactcatataaggagcagaggctaacagagattgttgatcaagttgaaaatcaacttgaagagat |
48474802 |
T |
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| Q |
101 |
gattgataatcaaaatgagcctctaaacattcctctcattgaatgtcaatttgataagatcttgatcgattcattgaagtggaaactcctcaaaactctt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48474801 |
gattgaaaatcaaaatgagcctctaaacattcctctcattgaatgtcaatttgataagatcttgatcgattcattgaagtggaaactcctcaaaactctt |
48474702 |
T |
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| Q |
201 |
atggagatgcttctgatgctcccaaacaggaacaaattgaggaaactaatgctggaatagtacaaacttcacactaaagtagagagcaaatctct |
295 |
Q |
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| T |
48474701 |
acggagatgcttttgatgctcccaaacaggaacaaattgagaaaactaatgctggaatactacaaacttcacactaaagtagagagcaaatctct |
48474607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16520075 - 16520123
Alignment:
| Q |
1 |
cctaccagaaccagcacaggaaagttcgcgcctcccactcatataagga |
49 |
Q |
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|||||| |||||||||||||| || | ||||||||||||| |||||||| |
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| T |
16520075 |
cctaccggaaccagcacaggataggttgcgcctcccactcgtataagga |
16520123 |
T |
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