View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_20 (Length: 378)
Name: NF21245_high_20
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 43695684 - 43695340
Alignment:
| Q |
18 |
gactagaaaagtgagagacatga-tgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgat |
116 |
Q |
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| T |
43695684 |
gactagaaaagtgagagacatgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgat |
43695585 |
T |
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| Q |
117 |
ccccatgttcaatctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcgg |
216 |
Q |
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| T |
43695584 |
ccccatgttcaatctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcgg |
43695485 |
T |
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| Q |
217 |
ggaggctaaaggcaaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttgtattctga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
43695484 |
ggaggctaaaggcaaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaacgaaaggattcgaagaaagagatttggattctga |
43695385 |
T |
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| Q |
317 |
attgggatgtgggagttggagaccatagacttatagctatgtatg |
361 |
Q |
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| T |
43695384 |
attgggatgtgggagttggagaccatagacttatagctatgtatg |
43695340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 43709577 - 43709432
Alignment:
| Q |
18 |
gactagaaaagtgagagacatga-tgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgat |
116 |
Q |
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| T |
43709577 |
gactagaaaggcgaaagacatgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagag |
43709478 |
T |
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| Q |
117 |
ccccatgttcaatctgctttaggaattaaaagctatgtggagaaag |
162 |
Q |
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| T |
43709477 |
cctcatgttcaatttgctttaagaatgaaaagttacgtggagaaag |
43709432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 43707830 - 43707708
Alignment:
| Q |
40 |
atgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctttagg |
139 |
Q |
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||||||| ||||||||||| | ||||||||| |||||||||||||| |||| ||||||| | ||||||| || | ||||||| ||| ||||||||| |
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| T |
43707830 |
atgaccaaccttgtaaggatactaaagttttatacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctttagg |
43707731 |
T |
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| Q |
140 |
aattaaaagctatgtggagaaag |
162 |
Q |
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||| ||||| | ||||||||||| |
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| T |
43707730 |
aatgaaaagttttgtggagaaag |
43707708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 43696443 - 43696407
Alignment:
| Q |
48 |
gcttgtaaggatcttcaagttttatgggaggaacttg |
84 |
Q |
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| T |
43696443 |
gcttgtaaggatcttcaaattttctgggaggaacttg |
43696407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 15827224 - 15827370
Alignment:
| Q |
18 |
gactagaaaagtgagagacatga-tgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgat |
116 |
Q |
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||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||| || |
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| T |
15827224 |
gactagaaaagcgagagacatgaatgaacaagcttgtaaggatcttcaagttttatgggaggaactagcgaaatttaaatttgatattacttggctagaa |
15827323 |
T |
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| Q |
117 |
ccccatgttcaatctgctttaggaattaaaagctatgtggagaaagc |
163 |
Q |
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| |||||||| | |||||||||||| ||||| || |||||||||| |
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| T |
15827324 |
tcgcatgttcactatgctttaggaataaaaagatacatggagaaagc |
15827370 |
T |
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