View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_24 (Length: 369)
Name: NF21245_high_24
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_24 |
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| [»] scaffold0008 (4 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 70109 - 69769
Alignment:
| Q |
11 |
tgtgagaatatgctcaaccatccccttttctccacatactctttgtatctacaaatcaatcttccatttacaaaggcgtttttctcttcatatatgatgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
70109 |
tgtgagaatatgctcaaccatccccttttctccacatactctttgtatctttaaatcaatcttccatttacaaaggcgttttgctcttcatatatgatgt |
70010 |
T |
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| Q |
111 |
taggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaaatccatggttgatgttgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
70009 |
taggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaaggctaataggtctgaaatccatggttgatgttgg |
69910 |
T |
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| Q |
211 |
gctattgcatttcggaataagagttatatatgtcttattgagctccttcggacattttccgttgttcaataccacaagggcgtggtgttggacatcacct |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69909 |
gctattgcatttgggaataagagttatatatgtcttattgagctcctttagacattttccgttgttcaataccacaagggcgtggtgttggacatcacct |
69810 |
T |
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| Q |
311 |
cctacaaaatgccaatacttttggtaaaataaggctagtaa |
351 |
Q |
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| T |
69809 |
cctacaaaatgccaatacttttggtaaaataaggctagtaa |
69769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 77952 - 77612
Alignment:
| Q |
11 |
tgtgagaatatgctcaaccatccccttttctccacatactctttgtatctacaaatcaatcttccatttacaaaggcgtttttctcttcatatatgatgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
77952 |
tgtgagaatatgctcaaccatccccttttctccacatactctttgtatctttaaatcaatcttccatttacaaaggcgttttgctcttcatatatgatgt |
77853 |
T |
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| Q |
111 |
taggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaaatccatggttgatgttgg |
210 |
Q |
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| T |
77852 |
taggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaaggctaataggtctgaaatccatggttgatgttgg |
77753 |
T |
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| Q |
211 |
gctattgcatttcggaataagagttatatatgtcttattgagctccttcggacattttccgttgttcaataccacaagggcgtggtgttggacatcacct |
310 |
Q |
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| T |
77752 |
gctattgcatttgggaataagagttatatatgtcttattgagctcctttagacattttccgttgttcaataccacaagggcgtggtgttggacatcacct |
77653 |
T |
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| Q |
311 |
cctacaaaatgccaatacttttggtaaaataaggctagtaa |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
77652 |
cctacaaaatgccaatacttttggtaaaataaggctagtaa |
77612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 341
Target Start/End: Complemental strand, 70500 - 70300
Alignment:
| Q |
141 |
ttgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaaatcc-atggttgatgttgggctattgcatttcggaataagagttatat |
239 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | || || ||||||||| | || | ||||| ||||||| |||| |
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| T |
70500 |
ttgtttttgtcacaattatcatcactacgttacaaagactaatatgtctgaaattctatagt-gatgttgggatcttagacttcgggataagagctataa |
70402 |
T |
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| Q |
240 |
atgtcttattgagctccttcggacattttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaa |
339 |
Q |
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|| |||||||||| ||||| | |||||| |||||||| |||| |||| || | ||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
70401 |
atttcttattgagatcctttatatattttctgttgttcagtacctcaagagctttgtgttggacatcacctcctacaatatgccaatacttttgttaaaa |
70302 |
T |
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| Q |
340 |
ta |
341 |
Q |
| |
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|| |
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| T |
70301 |
ta |
70300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 341
Target Start/End: Complemental strand, 78343 - 78143
Alignment:
| Q |
141 |
ttgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaaatcc-atggttgatgttgggctattgcatttcggaataagagttatat |
239 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | || || ||||||||| | || | ||||| ||||||| |||| |
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| T |
78343 |
ttgtttttgtcacaattatcatcactacgttacaaagactaatatgtctgaaattctatagt-gatgttgggatcttagacttcgggataagagctataa |
78245 |
T |
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| Q |
240 |
atgtcttattgagctccttcggacattttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaa |
339 |
Q |
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|| |||||||||| ||||| | |||||| |||||||| |||| |||| || | ||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
78244 |
atttcttattgagatcctttatatattttctgttgttcagtacctcaagagctttgtgttggacatcacctcctacaatatgccaatacttttgttaaaa |
78145 |
T |
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| Q |
340 |
ta |
341 |
Q |
| |
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|| |
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| T |
78144 |
ta |
78143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 29943305 - 29943235
Alignment:
| Q |
122 |
tgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaa |
192 |
Q |
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||||| |||||||||||||| | ||| |||||||| |||||||| |||||||| ||||| || |||||||| |
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| T |
29943305 |
tgtttcaacctatttgcaatagctttggtcacaatcttcatcaccacgttacagagacttattggtctgaa |
29943235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 8710960 - 8711024
Alignment:
| Q |
128 |
aacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaa |
192 |
Q |
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|||||||||||||| ||||| || || ||||||||||| || |||||||| ||||| || ||||| |
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| T |
8710960 |
aacctatttgcaatggttttggttacgattttcatcaccacattacaaaggctaattggcctgaa |
8711024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 20925919 - 20925983
Alignment:
| Q |
128 |
aacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaa |
192 |
Q |
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|||||||||||||| ||||| || || ||||||||||| || |||||||| ||||| || ||||| |
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| T |
20925919 |
aacctatttgcaatggttttggttacgattttcatcaccacattacaaaggctaattggcctgaa |
20925983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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