View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_26 (Length: 349)
Name: NF21245_high_26
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 5387298 - 5386976
Alignment:
| Q |
18 |
gtaatgtggagagtcaatgtgtacatttggtatgaatatatcatctttcaaaataaattatggtttgttaaaattacgatttaatcattcattctataca |
117 |
Q |
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| T |
5387298 |
gtaatgtggagagtcaatgtgtacatttggtatgaatatatcatctttcaaaataaattatggtttgttaaaattacgatttaatcattcattctataca |
5387199 |
T |
|
| Q |
118 |
tgtctaatattgtgtcttgtgtaatctatgcacagcaaatggtcctggtgtaccaagtttcccatgtttcataagccgaccaacattgagctaaaatttg |
217 |
Q |
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| T |
5387198 |
tgtctaatattgtgtcttgtgtaatctatgcacagcaaatggtcctggtgtaccaagtttcccatgtttcataagccgaccaacattgagctaaaatttg |
5387099 |
T |
|
| Q |
218 |
actatgtatattggcctaataggtggaattggttgctaaaagtgcttgaatgttgccccaaacttcaacattttaccattgaggttttgtttggttgtga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5387098 |
actatgtatattggcctaataggtggaattggttgctaaaagtgcttgaatgttgccccaaacttcaacattttaccattgaggttttgtttggttgtga |
5386999 |
T |
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| Q |
318 |
ttcttttcttttttaagtataat |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
5386998 |
ttcttttcttttttaagtataat |
5386976 |
T |
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