View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_27 (Length: 341)
Name: NF21245_high_27
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 40420438 - 40420752
Alignment:
| Q |
8 |
tgagatgaaggagatggatgtgaatcaaattattaagcaggaaaaatagttatactgcagaatnnnnnnnnntgttatgagtattaatcagagaaattta |
107 |
Q |
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| T |
40420438 |
tgagatgaaggagatggatgtgaatcaaattattaagcgggaaaaatagttataccgcagaataaaaaaa--tgttatgagtattactataagaaattta |
40420535 |
T |
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| Q |
108 |
aagatggtcaactgttaactaggaaaataatggtacagaaggctacgactattttgatttgactgccacgcaaaaggctagggataaagccaagctgtat |
207 |
Q |
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| T |
40420536 |
aagatagtcaactgttaactaggcaaataatggtacagaaggctacgactattttgatttgactgccacggcaaaggctagggataaagccaaattgtat |
40420635 |
T |
|
| Q |
208 |
atagaagtgaaatcgacgaaatcgacttcggtaaagaatagaaattggtttattctttctagaaagcagtttaaacttgctcaagaaattctggacaact |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||| |
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| T |
40420636 |
atagaagtgaaatcgacgaaatcgacttcagtaaagaatagaaattggtttattctttctaggaagtggtttaaacttgctcaagaaattatggagaact |
40420735 |
T |
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| Q |
308 |
acatgatcgcccatgtt |
324 |
Q |
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||||||||||||||||| |
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| T |
40420736 |
acatgatcgcccatgtt |
40420752 |
T |
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