View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_high_28 (Length: 340)
Name: NF21245_high_28
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 35370554 - 35370872
Alignment:
| Q |
17 |
aagtccatatactaatttattttcttcttggtttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370554 |
aagtccatatactaatttattttcttcttggtttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgta |
35370653 |
T |
|
| Q |
117 |
tgactacatttatggtacggtagataaatccacagatgttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtccacttaacacat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370654 |
tgactacatttatggtacggtagataaatccacagatgttatatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacat |
35370753 |
T |
|
| Q |
217 |
ttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370754 |
ttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccct |
35370853 |
T |
|
| Q |
317 |
ttacaatgctccctatgct |
335 |
Q |
| |
|
|||||||| || ||||||| |
|
|
| T |
35370854 |
ttacaatgttctctatgct |
35370872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 48 - 324
Target Start/End: Original strand, 35381152 - 35381428
Alignment:
| Q |
48 |
tttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatcc |
147 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| ||| ||||||||||| || ||||| || ||||||||||||||||| || |||||||||||| |
|
|
| T |
35381152 |
tttccacaggtttcactcattgcatcacaccaaatttaggtctaattactcactcttcatgcctatatatgactacatttatggcaccgtagataaatcc |
35381251 |
T |
|
| Q |
148 |
acagatgttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattac |
247 |
Q |
| |
|
||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
35381252 |
acagatgctacatatgaagcctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttagttccatctatcaattac |
35381351 |
T |
|
| Q |
248 |
gtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatg |
324 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35381352 |
gtttaggctttacttcattagcctccaatcctcaaacatctaaatggtacctatatttaatgtggccctttacaatg |
35381428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 48 - 335
Target Start/End: Original strand, 35355138 - 35355425
Alignment:
| Q |
48 |
tttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatcc |
147 |
Q |
| |
|
|||||| |||||||||||| | |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
35355138 |
tttccacaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatcc |
35355237 |
T |
|
| Q |
148 |
acagatgttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattac |
247 |
Q |
| |
|
||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || |||||| | | |
|
|
| T |
35355238 |
acagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgc |
35355337 |
T |
|
| Q |
248 |
gtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatgctccctatgct |
335 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| || ||||||| |
|
|
| T |
35355338 |
gtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatgtggccatttacaatgttctctatgct |
35355425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 55 - 324
Target Start/End: Original strand, 19685137 - 19685406
Alignment:
| Q |
55 |
aggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatg |
154 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||| |||||||||||| || ||||| || |||||| ||||||||||||| || |||| |||| |||||| |
|
|
| T |
19685137 |
aggtttcactcgctgcatcacacaaaatttaggtcaaattactcactcttcatgcctatatatgaccacatttatggtactgtggatacatcctcagatg |
19685236 |
T |
|
| Q |
155 |
ttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttagg |
254 |
Q |
| |
|
|| ||||||| | | | || |||| | ||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||| |||||||||| |
|
|
| T |
19685237 |
ctacatatgaagcttgttcgaagagacaagaggagtcaccagatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgtttagg |
19685336 |
T |
|
| Q |
255 |
ctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatg |
324 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |
|
|
| T |
19685337 |
gcttgcttccttagcctccaaccctcaaacatcgaaatggtatctcaatttaatgtggccttttacaatg |
19685406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 70 - 321
Target Start/End: Complemental strand, 19629499 - 19629248
Alignment:
| Q |
70 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacct |
169 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||| || ||||| || |||||||||||||||||||| || ||| ||||||||||| || ||||||| | | |
|
|
| T |
19629499 |
catcacacaaaatttaggtcaaattactcactcttcatgcctatatatgactacatttatggtacagtggatgcatccacagatgctacatatgaatctt |
19629400 |
T |
|
| Q |
170 |
cattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagc |
269 |
Q |
| |
|
|||| |||| | |||| |||||||||||||| ||||||||||||||||||||| || |||| |||| |||| |||| ||||| |||||||| ||||| |
|
|
| T |
19629399 |
gtttgaagagacaagaggaatcaccagatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgcttagggtttgcttccttagc |
19629300 |
T |
|
| Q |
270 |
atccaaccctcaaacatctaaatggtacctacatttaatgtggccctttaca |
321 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||| |||||| |
|
|
| T |
19629299 |
ctccaaccctcaaacttctaaatggtatctcaatttaatgtggccttttaca |
19629248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University