View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_high_29 (Length: 332)
Name: NF21245_high_29
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 16627616 - 16627884
Alignment:
| Q |
23 |
agacttctatcatatcattctatttttgcgtatttattatattttggtgaaaataacaaaagaaataaatgtgaaagagacaaaggaagttgcatgacaa |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16627616 |
agacttctgtcatatcattctatttttgcgtatttattatatttaggtgaaaataataaaagaaataaatgtgaaagagacaaaggaagttgcatgacaa |
16627715 |
T |
|
| Q |
123 |
aaattaatatgcataaaacaaagacgatgatgtcacatcagaaaatggatctatgacaagattttatgtgcaacaaaataagctgagctgaattgtgaat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16627716 |
aaattaatatgcataaaacaaagacgatgatgtcacatcagaaaatggatctatgacaagattttatgtgcaacaaaataagctgagctgaattgtgaat |
16627815 |
T |
|
| Q |
223 |
tccactaactgaattttttattatcctcgttttgtttaaaatttatgtatattgttacttttactacat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16627816 |
tccactaactgaattttttattatcctcgttttgtttaaaatttatgtatattgttacttttactacat |
16627884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University