View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21245_high_3 (Length: 775)

Name: NF21245_high_3
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21245_high_3
NF21245_high_3
[»] chr8 (1 HSPs)
chr8 (18-764)||(41391386-41392154)


Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 18 - 764
Target Start/End: Complemental strand, 41392154 - 41391386
Alignment:
Q  18 aggcataacttgctattctttataatatcactttggtttggaaaagaaaagggtacaagaaagttataattgaattagactctccaatgtctataaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41392154 aggcataacttgctattctttataatatcactttggtttggaaaagaaaagggtacaagaaagttataattgaattagactcttcaatgtctataaattt 41392055  T
Q  118 atttatttatattgcaacaagtactcaaacttatcacagtgttgaacaaaaaatctaatatacagaaatatgttgctgagactgagagattaagaattct 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41392054 atttatttatattgcaacaagtcctcaaacttatcacagtgttgaacaaaaaatctaatatacagaaatatgttgctgagactgagagattaagaattct 41391955  T
Q  218 aatttggtccatgctccccgagaagggaaccattgtgtgaattacttaacaaagatgggta-ctagaagtcattttttctgattgttggtgttgttggat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41391954 aatttggtccatgctccccgagaagggaaccattgtgtgaattacttaacaaagatgggtacctagaagtcattttttctgattgttggtgttgttggat 41391855  T
Q  317 tctcctactgtagggatggatagggcatggtgtttctgaggcaatacatattttctcttttgttctgaaattcagattcacttacgaattcgaattcctt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41391854 tctcctactgtagggatggatagggcatggtgtttctgaggcaatacatatttcctcttttgttctgaaattcagattcgcttacgaattcgaattcctt 41391755  T
Q  417 gtggtcgta------------------ggttaaccacattggtgatcgttgaatcgagattagattgtgcatattttaaactaggctttttagtttttaa 498  Q
    |||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41391754 gtggtcgtaggtttcccacattcacatggttaaccacattggtgatcgttgaatcgagattagattgtgcatattttaaactaggctttttagtttttaa 41391655  T
Q  499 aaacaactaaatatgtttgaagtctgcatcatccaatctcaatacaaagactacttgtatgattgactgtgtgaatgccggaactgcatgcacggaatcc 598  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41391654 aaacaaccaaatatgtttgaagtctgcatcatccaatctcaatacaaagactacttgtatgattgactgtgtgaatgccggaactgcatgcacggaatcc 41391555  T
Q  599 gaattcat---tgtgctcgtttactcttttgcagtagcaaaaagaataattggattatagtattcacaaaatgcagagactttgtaaaattgaaaaaaga 695  Q
    ||||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41391554 gaattcattgctgtgctcatttactcttttgcagtagcaaaaagaataattggattatagtattcacaacatgcagagactttgtaaaattgaaaaaaga 41391455  T
Q  696 aatggaaaattcagaaataagagttcattcatatattaaattaaacaactaggcaagtcaccacaggtt 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41391454 aatggaaaattcagaaataagagttcattcatatattaaattaaacaactaggcaagtcaccacaggtt 41391386  T

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