View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_high_30 (Length: 332)
Name: NF21245_high_30
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 2724218 - 2723910
Alignment:
| Q |
8 |
gagcagagatgtagtgctaagaatgctggcaagaaattcaatgtctgaaaaattagctgaggacattgataactcagtgagacatataattgagacagca |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2724218 |
gagcagtgatgtagtgctaagaatgctggcaagaaattcaatgtctgaaaaattagctgaggacattgataactcagtgagacatataattgagacagca |
2724119 |
T |
|
| Q |
108 |
tatgaagttgcaaagaatcacataaggaataatcgtgatgcaattgataaattagttgatgtgttgcttgaaaaagagacacttagtggagatgaattta |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2724118 |
tatgaagttgcaaagaatcacataaagaataatcgtgatgcaattgataaattagttgatgtgttgcttgaaaatgagacacttagtggagatgaattta |
2724019 |
T |
|
| Q |
208 |
gatcaatcttgtcagaatttatagatatttcttcaattaagattgatagaacctctataagggaaatgattgaagcatgagaatgatcatagctttctaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2724018 |
aatcaatcttgtcagaatttatagatatttcttcaattaagattgatagaacctctataagggaaatgattgaagcatgagaatgatcatagctttctaa |
2723919 |
T |
|
| Q |
308 |
tgtggtagg |
316 |
Q |
| |
|
||||||||| |
|
|
| T |
2723918 |
tgtggtagg |
2723910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University