View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21245_high_39 (Length: 279)

Name: NF21245_high_39
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21245_high_39
NF21245_high_39
[»] chr1 (5 HSPs)
chr1 (18-152)||(36755676-36755810)
chr1 (27-83)||(26331415-26331471)
chr1 (36-83)||(20817829-20817876)
chr1 (35-82)||(10650045-10650092)
chr1 (18-50)||(42825593-42825625)
[»] chr7 (3 HSPs)
chr7 (35-92)||(11693611-11693668)
chr7 (35-92)||(31270662-31270719)
chr7 (35-83)||(24677032-24677080)
[»] chr6 (1 HSPs)
chr6 (35-82)||(33545813-33545860)
[»] chr5 (5 HSPs)
chr5 (35-81)||(22641951-22641997)
chr5 (35-83)||(25955067-25955115)
chr5 (35-83)||(36463269-36463317)
chr5 (36-92)||(16192782-16192838)
chr5 (33-93)||(17772135-17772195)
[»] chr4 (3 HSPs)
chr4 (35-83)||(1186254-1186302)
chr4 (28-100)||(17651862-17651935)
chr4 (35-80)||(24716441-24716486)
[»] chr8 (1 HSPs)
chr8 (28-82)||(3318615-3318670)
[»] chr3 (2 HSPs)
chr3 (24-57)||(2905740-2905773)
chr3 (36-92)||(55212556-55212611)
[»] scaffold0466 (1 HSPs)
scaffold0466 (35-83)||(5191-5239)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 36755676 - 36755810
Alignment:
Q  18 tcctctaggagaggcaagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaattcgttggaacatgaaggagattgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  36755676 tcctctaggagaggcaagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaatttggttggaacatgaaggagactgag 36755775  T
Q  118 ctagccttgaattatgggatgaaccaggataatta 152  Q
    |||||||| |||||| || |||| |||||||||||    
T  36755776 ctagcctttaattatagggtgaatcaggataatta 36755810  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 26331471 - 26331415
Alignment:
Q  27 agaggcaagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 83  Q
    ||||| |||||||||| |||||||||||||| |||| ||||||||||||| ||||||    
T  26331471 agaggtaagaaatctttgacttgtgtgtctaagtaactgtaatcttgtgtaattata 26331415  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 20817829 - 20817876
Alignment:
Q  36 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 83  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  20817829 aaatcttagatttgtgtgtctaagtaactgtaatcttgtgtgattata 20817876  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 10650045 - 10650092
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattat 82  Q
    ||||| |||||||||||||| || |||||||||||||||| |||||||    
T  10650045 gaaattttagacttgtgtgtttaagtaattgtaatcttgtatgattat 10650092  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 42825593 - 42825625
Alignment:
Q  18 tcctctaggagaggcaagaaatcttagacttgt 50  Q
    ||||| |||||||||||||||||||||||||||    
T  42825593 tcctcaaggagaggcaagaaatcttagacttgt 42825625  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 11693611 - 11693668
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaat 92  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  11693611 gaaatattagacttgtgtgtctaagtaattgtaatcttgtgtgattatagtcgaaaat 11693668  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 31270719 - 31270662
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaat 92  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  31270719 gaaatattagacatgtgtgtctaagtaattgtaatcttgtgtgattatagtagaaaat 31270662  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 24677080 - 24677032
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 83  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||    
T  24677080 gaaatcttagacttgtgtgttaaagtaattgtaatcttgtgtgattata 24677032  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 33545860 - 33545813
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattat 82  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33545860 gaaatcttagacttgtgtgtctaagtaatggtaatcttgtgtgattat 33545813  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 22641997 - 22641951
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgatta 81  Q
    |||||||||||||||||||| || |||||||||||||||||||||||    
T  22641997 gaaatcttagacttgtgtgtttaagtaattgtaatcttgtgtgatta 22641951  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 25955067 - 25955115
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 83  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||    
T  25955067 gaaatcttagacttgtgtgtctaaataattgtaatcttgtgcgattata 25955115  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 36463317 - 36463269
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 83  Q
    ||||||||||| ||||||||| | |||||||||||||| ||||||||||    
T  36463317 gaaatcttagatttgtgtgtccaagtaattgtaatcttatgtgattata 36463269  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 16192782 - 16192838
Alignment:
Q  36 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaat 92  Q
    |||||| |||||||||| ||||  || |||||||||||| |||||||| ||||||||    
T  16192782 aaatctaagacttgtgtatctaaatatttgtaatcttgtatgattatagtagaaaat 16192838  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 17772135 - 17772195
Alignment:
Q  33 aagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaatt 93  Q
    ||||||||||| | ||||||||||| ||||||||||| || | |||||||| | |||||||    
T  17772135 aagaaatcttatatttgtgtgtctaagtaattgtaatattttatgattatagtggaaaatt 17772195  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 1186254 - 1186302
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 83  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  1186254 gaaatcttagacttgtgtgtctaagtaattgtaatcttatgttattata 1186302  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 17651862 - 17651935
Alignment:
Q  28 gaggcaagaaa-tcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaattcgttgga 100  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||||||||| ||||| |  |||||| ||||||    
T  17651862 gaggcaagaaaatcttagacttgtatgtctaagtaattgtcatcttgtgtgcttatagtgtaaaatttgttgga 17651935  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 24716441 - 24716486
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgatt 80  Q
    ||||| ||||||||||||||||| |||||||||||  |||||||||    
T  24716441 gaaattttagacttgtgtgtctaagtaattgtaatgatgtgtgatt 24716486  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 3318670 - 3318615
Alignment:
Q  28 gaggcaag-aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattat 82  Q
    |||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  3318670 gaggcaagtaaatcttagagttgtgcgtctaagtaattgtaatcttgtgtgattat 3318615  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 2905773 - 2905740
Alignment:
Q  24 aggagaggcaagaaatcttagacttgtgtgtcta 57  Q
    |||||||||| |||||||||||||||||||||||    
T  2905773 aggagaggcaggaaatcttagacttgtgtgtcta 2905740  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 55212611 - 55212556
Alignment:
Q  36 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaat 92  Q
    |||||||| |||||||||| || ||||||||||||| ||||||||||| | ||||||    
T  55212611 aaatcttaaacttgtgtgt-taagtaattgtaatctcgtgtgattatagtggaaaat 55212556  T

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Target: scaffold0466 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 5191 - 5239
Alignment:
Q  35 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 83  Q
    ||||| |||| |||||||||||| |||||||||||| | ||||||||||    
T  5191 gaaattttaggcttgtgtgtctacgtaattgtaatcctttgtgattata 5239  T

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