View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21245_high_4 (Length: 701)

Name: NF21245_high_4
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21245_high_4
NF21245_high_4
[»] chr7 (1 HSPs)
chr7 (83-242)||(47363495-47363658)
[»] chr1 (2 HSPs)
chr1 (204-285)||(4816742-4816823)
chr1 (118-195)||(34711561-34711638)
[»] chr3 (5 HSPs)
chr3 (13-197)||(33508409-33508590)
chr3 (204-285)||(25500985-25501066)
chr3 (89-126)||(1930009-1930046)
chr3 (83-155)||(8690337-8690409)
chr3 (83-155)||(9042206-9042278)
[»] chr5 (2 HSPs)
chr5 (232-285)||(41732461-41732514)
chr5 (204-273)||(43391063-43391132)
[»] chr8 (1 HSPs)
chr8 (204-287)||(22642806-22642889)
[»] chr6 (1 HSPs)
chr6 (89-126)||(1069058-1069095)
[»] chr2 (1 HSPs)
chr2 (89-126)||(29370290-29370327)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 47363495 - 47363658
Alignment:
Q  83 ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtg 182  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47363495 ttgagctagattctaagctagtggctgatagcatagttgataggccgaataatcagttggaatttgataatattatgtctcgttgtagatcatttttgtg 47363594  T
Q  183 tcattttccaaacttataaagaaattgtgtcgccca----taacctagcaagagtgtcaaaatt 242  Q
    ||||||| ||||||||||||||||||||||||||||    || |||||||||||||||||||||    
T  47363595 tcatttttcaaacttataaagaaattgtgtcgcccatagctagcctagcaagagtgtcaaaatt 47363658  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 4816742 - 4816823
Alignment:
Q  204 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt 285  Q
    ||||| ||||||||||| | ||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  4816742 aaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagtctttgatttgatttcatcttatatt 4816823  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 34711638 - 34711561
Alignment:
Q  118 gttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaac 195  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||| | ||||||||| ||||||||    
T  34711638 gttgataggtccaataatcagtcggaatttagtaatattatgtctcgatgtagatcactattgtgtcatgttccaaac 34711561  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 33508409 - 33508590
Alignment:
Q  13 agcataggcaatggggttgtctgatgccatctcatggttttgatcaattgagattatcgaaggtgctaaattgagttagattgtaagctagtggctgata 112  Q
    ||||||||||||||| |||  ||| ||||||| |||| || |||||||||  | |||| ||||||| |||||||| | ||||||||| |||| |  | ||    
T  33508409 agcataggcaatgggcttgcgtgacgccatcttatggctt-gatcaattggaactatcaaaggtgc-aaattgagcttgattgtaagttagtagtgggta 33508506  T
Q  113 gcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaactt 197  Q
     |||| |||||||| ||||||||| ||   |||||| ||||||||||| | | ||||||||| | ||||||||||||| ||||||    
T  33508507 tcatatttgataggtccaataatcggtcaaaatttgataatattatgt-ttggtgtagatcactattgtgtcattttctaaactt 33508590  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 25500985 - 25501066
Alignment:
Q  204 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt 285  Q
    |||||||||||||||||   ||||||| |  |||||||||||||||| ||| | ||||||| |||||||| |||||||||||    
T  25500985 aaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatttgattccatcttgtatt 25501066  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 1930009 - 1930046
Alignment:
Q  89 tagattgtaagctagtggctgatagcatagttgatagg 126  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1930009 tagattgtaagctagtggttgatagcatagttgatagg 1930046  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 8690337 - 8690409
Alignment:
Q  83 ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat 155  Q
    ||||| |||||||||||||||| | ||||||||||||||||||| | |||| ||||   || |||||||||||    
T  8690337 ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat 8690409  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 9042206 - 9042278
Alignment:
Q  83 ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat 155  Q
    ||||| |||||||||||||||| | ||||||||||||||||||| | |||| ||||   || |||||||||||    
T  9042206 ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat 9042278  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 41732461 - 41732514
Alignment:
Q  232 gtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt 285  Q
    ||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||    
T  41732461 gtgtcaagattgcatgctcgtcatcaagtttttgatttgatttcatcttgtatt 41732514  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 43391132 - 43391063
Alignment:
Q  204 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatt 273  Q
    ||||| |||||||||||   ||||||| ||||||||| ||||||||  |||||| || ||||||||||||    
T  43391132 aaattatgtcgcccatactttagcaagggtgtcaaaactgtatgctagtcatcatgtttttgatttgatt 43391063  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 22642889 - 22642806
Alignment:
Q  204 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtattta 287  Q
    ||||| ||||||||||  | |||| || | ||| || |||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  22642889 aaattatgtcgcccatcgcttagcgagggagtcgaatttgtatgctagtcaccaagtatttgatttgatttcatcttgtattta 22642806  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 1069095 - 1069058
Alignment:
Q  89 tagattgtaagctagtggctgatagcatagttgatagg 126  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  1069095 tagattgtaagctagtggatgatagcatagttcatagg 1069058  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 29370290 - 29370327
Alignment:
Q  89 tagattgtaagctagtggctgatagcatagttgatagg 126  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  29370290 tagattgtaagctagtggttgatagcataattgatagg 29370327  T

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