View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_57 (Length: 237)
Name: NF21245_high_57
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_57 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 8191393 - 8191613
Alignment:
| Q |
17 |
gaaaagtctgtaaagggaatagggcttgtaattagaaacaattattgaaagacagaataatatcagtataccctaaggaaaaacggaaaagaaacctgca |
116 |
Q |
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| T |
8191393 |
gaaaagtctgtaaagggaatagggcttgtaattagaaacaattattgaaagacagaataatatcagtataccctaaggaaaaacggaaaataaacctgca |
8191492 |
T |
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| Q |
117 |
tgagagtgttgagcgcatatttacaggaccgcgatgaatccccgctcaaactgaaattaaaagtttttgcaacctgtttgaaataacaaaagaaacgtta |
216 |
Q |
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| T |
8191493 |
tgagagtgttgagcgcatatttacaggaccgcgatgaatccccgctcaaactgaaattaaaagtttttgcaacctgtttgaaataacaagagaaacgtta |
8191592 |
T |
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| Q |
217 |
atacttcatgagctctctccc |
237 |
Q |
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| T |
8191593 |
atacttcatgagctctctccc |
8191613 |
T |
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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 42349217 - 42349420
Alignment:
| Q |
37 |
agggcttgtaattagaaacaattattgaaagacagaataatatcagtataccctaaggaaaaacggaaaagaaa----cctgcatgagagtgttgagcgc |
132 |
Q |
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| T |
42349217 |
aggggttgtaaatagaaacaattactaaaagacgcaataatctcaatatacactgaagaaaaacggaaaatacatttacctgcatgagagtgttgagcac |
42349316 |
T |
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| Q |
133 |
atatttacaggaccgcgatgaatccccgctcaaactgaaattaaaagtttttgcaacctgtttgaaataacaaaagaaacgttaatacttcatgagctct |
232 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||| |
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| T |
42349317 |
atatttacaggaccgcgatgaagccccactcaaactgaaatcaaaagtttttgcaacctatttgaaatagcaaaagaaacattaatacttcatgatttct |
42349416 |
T |
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| Q |
233 |
ctcc |
236 |
Q |
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|||| |
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| T |
42349417 |
ctcc |
42349420 |
T |
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