View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_59 (Length: 235)
Name: NF21245_high_59
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_59 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 42824868 - 42825083
Alignment:
| Q |
4 |
aaggtaaagtagcaataatcactggaggtgctagtggcattggtgcagctactgctaaactatttgttcaacatggtgctaaagttatcattgcagatat |
103 |
Q |
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| T |
42824868 |
aaggtaaagtagcaataatcacaggaggtgctagtggaattggtgcagctactgctaaactatttgttcaacatggtgctaaagttatcattgcagatat |
42824967 |
T |
|
| Q |
104 |
tcaagacgaattaggccaatctctttgcaatgaacttggcacaaagaacattctctatgttcactgcaatgtaaccactgaatcagacataaaaaacgtg |
203 |
Q |
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|||||| ||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42824968 |
tcaagatgaagtaggtcaatccctttgcaatgaacttggcccaaagaacattctctatgttcactgcaatgtaaccactgaatcagacataaaaaatgtg |
42825067 |
T |
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| Q |
204 |
gttgataccgcagttt |
219 |
Q |
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|||||||||||||||| |
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| T |
42825068 |
gttgataccgcagttt |
42825083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 42821230 - 42821445
Alignment:
| Q |
4 |
aaggtaaagtagcaataatcactggaggtgctagtggcattggtgcagctactgctaaactatttgttcaacatggtgctaaagttatcattgcagatat |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
42821230 |
aaggtaaagtagcaataatcactggaggtgctagtggcattggtgcagctactgctaaacaatttgttcaaaatggtgctaaagttatcattgcagatat |
42821329 |
T |
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| Q |
104 |
tcaagacgaattaggccaatctctttgcaatgaacttggcacaaagaacattctctatgttcactgcaatgtaaccactgaatcagacataaaaaacgtg |
203 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||| ||||||| | |||||||||||| |||| |||| |
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| T |
42821330 |
tcaagacgaattaggccaatctctttgcaaaaatcttggcacaaagaacattctttgtgttcactgcgatgtaactattgaatcagacatcaaaaccgtg |
42821429 |
T |
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| Q |
204 |
gttgataccgcagttt |
219 |
Q |
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||||||| |||||||| |
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| T |
42821430 |
gttgatatcgcagttt |
42821445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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