View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_62 (Length: 209)
Name: NF21245_high_62
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 36755276 - 36755082
Alignment:
| Q |
1 |
tgttttgcacgtggtcagaagaagacaaacaatattgcagaacttgaaaagcgacatttctttagaagaagacaaaattgatcagcttccatcaaagtgt |
100 |
Q |
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| T |
36755276 |
tgttttgcacgtggtcagaagaagacaaacaatattgcagaacttgaaaagcgacatttctttagaagaggacaaaactgatcagcgtccatcaaagtgt |
36755177 |
T |
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| Q |
101 |
tgaccaatgacatgtccattagagtctgctttcatcataatcttcaaggcttgatgcatcttctaattagagctttgaattttgttgaactttct |
195 |
Q |
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| T |
36755176 |
tgaccaatgacatgtccattagagtctgctttcatcataatcttcaaggcttgatgcatcttctaattagagctttgaattttgttgaactttct |
36755082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 33546296 - 33546414
Alignment:
| Q |
6 |
tgcacgtggtcagaagaagacaaacaatattgcagaacttgaaaagcgacatttctttagaagaagacaaaattgatcagcttccatcaaagtgttgacc |
105 |
Q |
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| T |
33546296 |
tgcacatggtcagaagaagacaaacaatactgcataacttggaatgcgacgtctcttcaaaaaaagaaaaaactagtcagggtccatcagagtgttgacc |
33546395 |
T |
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| Q |
106 |
aatgacatgtccattagag |
124 |
Q |
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| T |
33546396 |
aatgacatgtccattagag |
33546414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 12870066 - 12869985
Alignment:
| Q |
115 |
tccattagagtctgctttcatcataatcttcaaggcttgatgcatcttctaattagagctttga-attttgttgaactttct |
195 |
Q |
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| T |
12870066 |
tccattagagtatgttttcatcaaagccttcaaggcttgatgcatcttctaattagaactttgacattttattgacctttct |
12869985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 33546463 - 33546515
Alignment:
| Q |
143 |
ttcaaggcttgatgcatcttctaattagagctttgaattttgttgaactttct |
195 |
Q |
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| T |
33546463 |
ttcaaggcttaatgcatcttctgatcagagctttaaattttgtttacctttct |
33546515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 11739986 - 11739878
Alignment:
| Q |
11 |
gtggtcagaagaagacaaacaatattgcagaacttgaaaagcgacatttctttagaagaagacaaaattgatcagcttccatcaaagtgttgaccaatga |
110 |
Q |
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| T |
11739986 |
gtggttagaagaagacagataatattgcagaatttggaaagctacgtctctttagaaaaaaacaacaatggtcagagtccatcaaagtgttgacgattga |
11739887 |
T |
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| Q |
111 |
catgtccat |
119 |
Q |
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| T |
11739886 |
cgtgtccat |
11739878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 10677359 - 10677391
Alignment:
| Q |
3 |
ttttgcacgtggtcagaagaagacaaacaatat |
35 |
Q |
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| T |
10677359 |
ttttgcacgtggtcggaagaagacaaacaatat |
10677391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 18114766 - 18114796
Alignment:
| Q |
1 |
tgttttgcacgtggtcagaagaagacaaaca |
31 |
Q |
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| T |
18114766 |
tgttttgcacgtggtcagaagaagacaaaca |
18114796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 25954590 - 25954561
Alignment:
| Q |
48 |
aaagcgacatttctttagaagaagacaaaa |
77 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25954590 |
aaagcgacatttctttagaagaagacaaaa |
25954561 |
T |
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