View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_7 (Length: 556)
Name: NF21245_high_7
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_7 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 284 - 556
Target Start/End: Original strand, 12957448 - 12957718
Alignment:
| Q |
284 |
cttatgcagaattgtgagatatttatggttggtgacaaaaggataaaaaccccgtggggtcaattacagctgcaaatagagaaaatgaaagtgagatgag |
383 |
Q |
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| T |
12957448 |
cttatgcagaattgtgagatatttgtggttgatgacaaaaggatatcaattc-gtggg-tcaattacagctgcaaatagagaaaatgaaagtgagatgag |
12957545 |
T |
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| Q |
384 |
tggatttatatttgtcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatac |
483 |
Q |
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| T |
12957546 |
tggatttatatttatcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatac |
12957645 |
T |
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| Q |
484 |
ctctccaaaaccgttgtcccagaaggatggaccaattggagttacgacggtagcacagagtaagaacattatc |
556 |
Q |
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| T |
12957646 |
ctctccaaaaccattgtcccagaaggatggaccaattggagttatgatggtagcactgagtaagaacattatc |
12957718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 285 - 556
Target Start/End: Complemental strand, 14241504 - 14241234
Alignment:
| Q |
285 |
ttatgcagaattgtgagatatttatggttggtgacaaaaggataaaaaccccgtggggtcaattacagctgcaaatagagaaaatgaaagtgagatgagt |
384 |
Q |
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| T |
14241504 |
ttatgcagaattgtgagatatttgtggttgatgacaaaaggatattaattc-gtggg-tcaattacagctgcaaatagagaaaatgaaagtgagatgagt |
14241407 |
T |
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| Q |
385 |
ggatttatatttgtcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatacc |
484 |
Q |
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| T |
14241406 |
ggatttatatttgtcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatacc |
14241307 |
T |
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| Q |
485 |
tctccaaaaccgttgtcccag-aaggatggaccaattggagttacgacggtagcacagagtaagaacattatc |
556 |
Q |
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| T |
14241306 |
tcttcaaaaccgttgttccagaaaggatggaccaattggagttatgacggtagcacagaataagagcattatc |
14241234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 14241780 - 14241570
Alignment:
| Q |
12 |
tatacttcacaaaatcaatctgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagac |
111 |
Q |
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| T |
14241780 |
tatacttcacaaaatcaatatgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagac |
14241681 |
T |
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| Q |
112 |
attactacgagtct---tgttacattcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagttcattttcttatctattttc |
208 |
Q |
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| T |
14241680 |
attactacgagtcttgttgttacattcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagttcattttcttatctattttc |
14241581 |
T |
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| Q |
209 |
tacatccttac |
219 |
Q |
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| T |
14241580 |
tacatccttac |
14241570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 12957222 - 12957379
Alignment:
| Q |
32 |
tgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagacattactacgagtcttgttac |
131 |
Q |
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| T |
12957222 |
tgtggcagcagagaaagctgcattttatcattgtgcattttacagtacacacaacacactctttgattacaaaggtagacattactatgagtcttgttac |
12957321 |
T |
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| Q |
132 |
attcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagtt |
189 |
Q |
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| T |
12957322 |
attcaaggctccattgatttcatatttggtcgtggcagaaccatcttccaagtgagtt |
12957379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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