View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_high_8 (Length: 549)
Name: NF21245_high_8
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 11 - 536
Target Start/End: Original strand, 2835252 - 2835777
Alignment:
| Q |
11 |
cagagagtgtaacaacatcatggatgaagaaaaggttctttgtagaaaccttagttaatgttctaccaccagagaaagattcaattccatgtaactttct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2835252 |
cagagagtgtaacaacatcatggatgaagaaaaggttctttgtagaaaccttagttaatgttctaccaccagagaaagattcaattccatgtaactttct |
2835351 |
T |
|
| Q |
111 |
ccttaggctattgagaacagctaacatggtaggtgttgatggaagctatagacaagagctagagaagagaatttcatggcagttagatcaagcttgtttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2835352 |
ccttaggctattgagaacagctaacatggtaggtgttgatggaagctatagacaagagctagagaagagaatttcatggcagttagatcaagcttgtttg |
2835451 |
T |
|
| Q |
211 |
aaagaacttgttattccttcttttagtcacacttgtgggacacttttggattttgagcttgttattaggcttgttaagaggtttgttagtttggataatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2835452 |
aaagaacttgttattccttcttttagtcacacttgtgggacacttttggattttgagcttgttattaggcttgttaagaggtttgttagtttggataatg |
2835551 |
T |
|
| Q |
311 |
aaggtgctaaaagtggtgctgctttggttaaggttgctaagttggttgattcgtacctttgtgaagctgctgttgatgctaatttgaggttggatgagtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2835552 |
aaggtgctaaaagtggtgctgctttggttaaggttgctaagttggttgattcgtacctttgtgaagctgctgttgatgctaatttgaggttggatgagtt |
2835651 |
T |
|
| Q |
411 |
tgttactcttgctggtgctcttccaagtcatgctagagctactgatgatggtttgtatagagccattgatacttacctaaaagtatgttttctctatctt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
2835652 |
tgttactcttgctggtgctcttccaagtcatgctagagctactgatgatggtttgtatagagccattgatacttacttaaaagtatgttttctttatctt |
2835751 |
T |
|
| Q |
511 |
ggatgtttcaatctttattttgtttt |
536 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2835752 |
ggatgtttcaatctttattttgtttt |
2835777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 503
Target Start/End: Complemental strand, 44265710 - 44265223
Alignment:
| Q |
16 |
agtgtaacaacatcatggatgaagaaaaggttctttgtagaaaccttagttaatgttctaccaccagagaaagattcaattccatgtaactttctcctta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||| |||||||| |||||||| ||||| |||||| |
|
|
| T |
44265710 |
agtgtaacaacatcatggatgaagaaaaggttctttgttgaaaccttagtcagtgttcttccaccagacaaagattccattccatgcaacttcctccttc |
44265611 |
T |
|
| Q |
116 |
ggctattgagaacagctaacatggtaggtgttgatggaagctatagacaagagctagagaagagaatttcatggcagttagatcaagcttgtttgaaaga |
215 |
Q |
| |
|
| || | | |||||| |||||||| ||| || | ||| || || || ||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44265610 |
gccttcttaaaacagcaaacatggttcttgtcgagtctacttatcgaaccgatcttgagaatcgaatttcatggcagttagatcaagcttcattgaaaga |
44265511 |
T |
|
| Q |
216 |
acttgttattccttcttttagtcacacttgtgggacacttttggattttgagcttgttattaggcttgttaagaggtttgttagtttggataatgaaggt |
315 |
Q |
| |
|
||| | || |||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||| | |||||||||||| ||||||| ||| |||| || |
|
|
| T |
44265510 |
actcatgataccttctttcagtcatacttgtgggacccttttggatgttgagcttgttattaggttggttaagaggtttattagtttagatcatgatgga |
44265411 |
T |
|
| Q |
316 |
gctaaaagtggtgctgctttggttaaggttgctaagttggttgattcgtacctttgtgaagctgctgttgatgctaatttgaggttggatgagtttgtta |
415 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||||||| | | |||||||||||||| ||| | |||||||| |
|
|
| T |
44265410 |
gttaaaactggtgctgctttggttaaggttgctaaattggttgattgttaccttgctgaagctggtttggatgctaatttgagtttgtctcagtttgttg |
44265311 |
T |
|
| Q |
416 |
ctcttgctggtgctcttccaagtcatgctagagctactgatgatggtttgtatagagccattgatacttacctaaaagtatgttttct |
503 |
Q |
| |
|
| ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||| ||||| || |||||| ||||||| |
|
|
| T |
44265310 |
cacttgctggtgctcttcctaatcatgcaagagctactgatgatggtttatatagagccattgacacttatcttaaagtacgttttct |
44265223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University