View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_1 (Length: 813)
Name: NF21245_low_1
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 644; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 9 - 796
Target Start/End: Original strand, 22206786 - 22207568
Alignment:
| Q |
9 |
tgtagcagcacagaggccatcaagggaataatttaatttcatcaaaaaattacttaacaaaaacctaaaattaagaaaatcttatccaagaaatattgat |
108 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22206786 |
tgtagcagcccagaggccatcaagggaataatttaatttcatcaaaaaattacttaacaaaaacctaaaattaagaaaatcttatccaagaaatattgat |
22206885 |
T |
|
| Q |
109 |
gtctctcatgcttgttgagtttagtcggaaagaaacaaatgagattgttcacgcgttagcaggggtagccacattttcatctaactccattatttattaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22206886 |
gtctctcatgcttgttgagtttagtcggaaagaaacaaatgagattgttcacgcgttagcaggggtagccacattttcatccaactccattatttattaa |
22206985 |
T |
|
| Q |
209 |
tgaaatgctataagcttctttccctcnnnnnnnnnnnnnn----cttatccaaagatattcagtctcaacaaaaaattcaatgannnnnnnattatccat |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
22206986 |
tgaaatgctataagcttctttccctcaaaaaaaaaaaaaaaaaacttatccaaagatattcagtctcaacaaaaaattcaatgatttttttattatcgat |
22207085 |
T |
|
| Q |
305 |
tgaaaaataaatgttaaagaaattgacttcaataatttattaattgattttgcattttaaaacctcaaataatttaaattacttgtagccagtcataact |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22207086 |
tgaaaaataaatgttaaagaaattgacttcaataatttattaattgattttgcattttaaaacctcaaataatttaaattacttgtagccagtcataact |
22207185 |
T |
|
| Q |
405 |
tatcataagaaagaaatcaaagaagtgtggacaacaaatcaccaacctcaaccaaaaccaaaatgaatttattttgtatggctactatggcagatctgaa |
504 |
Q |
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| T |
22207186 |
tatcataagaaagaaatcaaagaagtgtggacaacaaatcaccaacctcaaccaaaaccaaaatgaatttattttgtatg---------gcagatctgaa |
22207276 |
T |
|
| Q |
505 |
gttgctcaataaatatcaaacaatgatagagaaaagcaagtcaaagtcaatgtctttctccccatagacttaactattccaagagcttgaagaacatata |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22207277 |
gttgctcaataaatatcaaacaatgatagagaaaagcaagtcaaagtcaatgtctttctcaccatagacttaactattccaagagcttgaagaacatata |
22207376 |
T |
|
| Q |
605 |
tgctataattttctacttcatcaatctcaccattgatcaggagaaaccatagacacaacaaaatgtgtgacactgtgatctcctttgcttgcgatcagtt |
704 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22207377 |
tgctataattttctacttcatcaatctcaccattaatcaggagaaaccatagacacaacaaaatgtgtgacactgtgatctcctttgctttcgatcagtt |
22207476 |
T |
|
| Q |
705 |
gctttcattagctcgggaccatttgcttccactattaaaggaagtaacgaatatgataagaggtgtcccaaaagaagttgcagacatgaaaa |
796 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22207477 |
gcttccgttagctcgggaccatttgcttccactattaaaggaagtaaccaatatgataagaggtgtcccaaaagaagttgcagacatgaaaa |
22207568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 788
Target Start/End: Complemental strand, 22437627 - 22437554
Alignment:
| Q |
715 |
gctcgggaccatttgcttccactattaaaggaagtaacgaatatgataagaggtgtcccaaaagaagttgcaga |
788 |
Q |
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||||| || |||||||||||||||||||||| || | || ||||| || ||||||||||||||| ||||||| |
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| T |
22437627 |
gctcgtgatcatttgcttccactattaaaggtagcattcaacatgattaggggtgtcccaaaagaaattgcaga |
22437554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 795
Target Start/End: Complemental strand, 29611202 - 29611134
Alignment:
| Q |
727 |
ttgcttccactattaaaggaagtaacgaatatgataagaggtgtcccaaaagaagttgcagacatgaaa |
795 |
Q |
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|||||||||| ||||||||||| ||| || ||||| || ||||||||||||||| ||| ||||||||| |
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| T |
29611202 |
ttgcttccaccattaaaggaagcaacaaacatgattaggggtgtcccaaaagaaattgtggacatgaaa |
29611134 |
T |
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