View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_13 (Length: 444)
Name: NF21245_low_13
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 11626040 - 11625632
Alignment:
| Q |
15 |
actttcaaccttgtaacaaggttaccaacatcactagcattgaagtaaagaatcttgatgtagatgaaggtacagagaacccttgttagacttttagccc |
114 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11626040 |
actttcaacctggtaacaaggttaccaacatcactagcattgaagtaaagaatcttgatgttgatgaaggtacagagaacccttgttagacttttagcca |
11625941 |
T |
|
| Q |
115 |
gttactactctcgattaagagactgaatta-tcaaggaaattacactcgatgaaataataaaattatctttgatggtaaagatacaaaagtcaccatcaa |
213 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625940 |
gttactactctcgattaagagagtgaattaatcaaggaaattacactcgatgaaataataaaattatctttgatggtaaagatacaaaagtcaccatcaa |
11625841 |
T |
|
| Q |
214 |
aaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggtttcaagcttttggttacatgggagttgaggg |
313 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625840 |
aaatctttgtcgcatcagatctccaacagatgcactgacggtgcatctagttgttgcctgactcatggtttcaagcttttggttacatgggagttgaggg |
11625741 |
T |
|
| Q |
314 |
aaagtacgtgagtatttgctcaaaatgtgaaaggagcagcttttgtaaccctacgtgagaaagagagagtatatataggagagtgaacgtgagtgattga |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||| |
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| T |
11625740 |
aaagtacgtgagtatttgctcaaaatgtgaaaggagcagtttttgtaaccctaagtgagaatgagagggtatatataggaaagtgaacgtgagtgattga |
11625641 |
T |
|
| Q |
414 |
atgtgtgag |
422 |
Q |
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| T |
11625640 |
atgtgtgag |
11625632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 31050051 - 31049947
Alignment:
| Q |
185 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggttt |
284 |
Q |
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||||||||||||| | ||||||||||||| | |||||| | |||||||||||||||||||||| | | | | ||||||||| || |||||||| |||| |
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| T |
31050051 |
gatggtaaagatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcattaatagagaatctagttgttgtttgactcatcgttt |
31049952 |
T |
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| Q |
285 |
caagc |
289 |
Q |
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||||| |
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| T |
31049951 |
caagc |
31049947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 31040035 - 31039971
Alignment:
| Q |
185 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcact |
249 |
Q |
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| T |
31040035 |
gatggtaaacatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcact |
31039971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 21185285 - 21185321
Alignment:
| Q |
144 |
atcaaggaaattacactcgatgaaataataaaattat |
180 |
Q |
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| T |
21185285 |
atcaaggaaatcacactcgatgaaataataaaattat |
21185321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 31046195 - 31046135
Alignment:
| Q |
191 |
aaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactga |
251 |
Q |
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||||||| | ||||||| |||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
31046195 |
aaagatatagaagtcacaatcaaagatatttgtagcatcagatctacaacatatgcactga |
31046135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 31015639 - 31015595
Alignment:
| Q |
197 |
acaaaagtcaccatcaaaaatctttgtagcatcagatctccaaca |
241 |
Q |
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| T |
31015639 |
acaaaagtcaccttcatcgatctttgtagcatcagatctccaaca |
31015595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 174
Target Start/End: Original strand, 50968789 - 50968819
Alignment:
| Q |
144 |
atcaaggaaattacactcgatgaaataataa |
174 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50968789 |
atcaaggaaattacactcgatgaaataataa |
50968819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 174
Target Start/End: Original strand, 50970901 - 50970931
Alignment:
| Q |
144 |
atcaaggaaattacactcgatgaaataataa |
174 |
Q |
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| T |
50970901 |
atcaaggaaattacactcgatgaaataataa |
50970931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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