View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21245_low_14 (Length: 439)

Name: NF21245_low_14
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21245_low_14
NF21245_low_14
[»] chr1 (5 HSPs)
chr1 (219-410)||(29467100-29467291)
chr1 (219-400)||(29452626-29452807)
chr1 (219-400)||(29423907-29424088)
chr1 (219-374)||(29442634-29442789)
chr1 (52-219)||(29466798-29466965)
[»] chr2 (13 HSPs)
chr2 (219-410)||(14551003-14551193)
chr2 (219-325)||(8572776-8572882)
chr2 (234-322)||(10372653-10372741)
chr2 (219-322)||(9292699-9292802)
chr2 (219-283)||(10336621-10336685)
chr2 (219-324)||(10353914-10354019)
chr2 (219-282)||(9283449-9283512)
chr2 (219-322)||(9321762-9321865)
chr2 (219-283)||(7114920-7114984)
chr2 (219-345)||(9316770-9316899)
chr2 (219-276)||(10348620-10348677)
chr2 (219-322)||(9060373-9060479)
chr2 (239-283)||(9275333-9275377)
[»] chr8 (1 HSPs)
chr8 (219-349)||(41965997-41966130)
[»] chr4 (1 HSPs)
chr4 (219-322)||(26575650-26575753)
[»] scaffold0667 (1 HSPs)
scaffold0667 (219-325)||(5227-5333)
[»] chr3 (1 HSPs)
chr3 (219-322)||(37463293-37463396)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 219 - 410
Target Start/End: Original strand, 29467100 - 29467291
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467100 aatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 29467199  T
Q  319 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaacttcatctctctgcttggttcat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  29467200 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaacttcatctctctgttcggttcat 29467291  T

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Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 219 - 400
Target Start/End: Original strand, 29452626 - 29452807
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  29452626 aatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttcgacacaactctgttttcta 29452725  T
Q  319 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaacttcatctctctg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  29452726 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaactccccaacaacaacatctctctg 29452807  T

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Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 219 - 400
Target Start/End: Complemental strand, 29424088 - 29423907
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    ||||||||||||| ||||||||||||||||  |||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  29424088 aatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttcta 29423989  T
Q  319 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaacttcatctctctg 400  Q
    ||||||||||||||||||||||||||| |||  | |||||||||||| ||||||||||  | ||||||||||||||||||||    
T  29423988 ccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctttcaaaggctccaacaacttcatctctctg 29423907  T

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Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 219 - 374
Target Start/End: Original strand, 29442634 - 29442789
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  29442634 aatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttcta 29442733  T
Q  319 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttca 374  Q
    ||||||| | ||||||||||||||||||||| || ||||||||||  |||||||||    
T  29442734 ccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattcctttca 29442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 29466798 - 29466965
Alignment:
Q  52 atcataattgttaatcggatttgaatctccatttctcatttatgtgcgtgagttttcaatgactgttatcatttcgtcgttaaacgcaa-----aagttg 146  Q
    ||||||||||||||| | |||| |||||| |||| ||||||||||  |||||||||||||| || |||| ||||| || | |||| |||     |||| |    
T  29466798 atcataattgttaattgaatttaaatctcaatttttcatttatgtatgtgagttttcaatggctattattatttcctcctaaaacacaaggtggaagt-g 29466896  T
Q  147 gattgcatttggtttgtagaaagaaagaaagaaaggcggggaaaattgagaggttggttgcatttgtgtcata 219  Q
    ||||||||||| |||||||||    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  29466897 gattgcatttgatttgtagaa----agaaagaaaggcgggaaaaattgagaggttggttgcatttgtgacata 29466965  T

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Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 219 - 410
Target Start/End: Complemental strand, 14551193 - 14551003
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||| ||| |||||||||||||||||| ||| || ||||    
T  14551193 aatcacttcaatccctaatcgattcccacaacttcatcaaacttcaccta-aaaattccctcaattgttccttaatccttcgacacaagtccaatctcta 14551095  T
Q  319 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaacttcatctctctgcttggttcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  ||||||||||||||||||||| |||||||    
T  14551094 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcgaaggcttcaacaacttcatctctctgctcggttcat 14551003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 8572776 - 8572882
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    |||||||| ||||  |||||||||||||||| |||| ||| ||||||||| |||||||||||||||||| ||||||| |||||| ||||| |||| ||||    
T  8572776 aatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaactacgatatcta 8572875  T
Q  319 ccaaatc 325  Q
    |||||||    
T  8572876 ccaaatc 8572882  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 10372741 - 10372653
Alignment:
Q  234 taatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa 322  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| || ||| | |||| ||||||||    
T  10372741 taatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaa 10372653  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 9292802 - 9292699
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    |||||||| |||||||||||||||| ||||  ||||  || ||||||||| ||||||||||||| || | |||||||||||||||||| | |||| ||||    
T  9292802 aatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctcta 9292703  T
Q  319 ccaa 322  Q
    ||||    
T  9292702 ccaa 9292699  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 10336685 - 10336621
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaat 283  Q
    |||||||| ||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  10336685 aatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat 10336621  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 10354019 - 10353914
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    ||||| || ||||||||||||||||| ||||||||||||| |||||||||  |||||||| |||||  | |||||| ||||||  ||| | |||| ||||    
T  10354019 aatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatcta 10353920  T
Q  319 ccaaat 324  Q
    ||||||    
T  10353919 ccaaat 10353914  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 9283449 - 9283512
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaa 282  Q
    ||||||||| ||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||    
T  9283449 aatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 9321865 - 9321762
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    |||||||| ||||| |||||||||| ||| | |||||||| ||||| ||| |||||||||||| ||| | ||||||| ||| |||||| | |||| ||||    
T  9321865 aatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctcta 9321766  T
Q  319 ccaa 322  Q
    ||||    
T  9321765 ccaa 9321762  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 7114920 - 7114984
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaat 283  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||| ||  |||||||| |||||    
T  7114920 aatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 9316899 - 9316770
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaat---tccctcaatcgtttcttaatccttcgacacaactccgattt 315  Q
    |||||||| ||||  |||| ||||| ||||| |||||||| ||||||||| |||||   ||||||||||| | |||||||||||   |||| |||||  |    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact 9316800  T
Q  316 ctaccaaatcaacgatttctctaacctaac 345  Q
    |||||||||| | |||||| || |||||||    
T  9316799 ctaccaaatcgatgatttccctgacctaac 9316770  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 10348677 - 10348620
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattc 276  Q
    |||||||| ||||| |||||||||||| |||||||||||| ||||||||  |||||||    
T  10348677 aatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 9060373 - 9060479
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaatt---ccctcaatcgtttcttaatccttcgacacaactccgattt 315  Q
    |||||||| ||||| |||||||||| ||||| ||||  || ||| ||||| |||||    |||||||||| ||  |||||||||||||||| |||||| |    
T  9060373 aatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgatct 9060472  T
Q  316 ctaccaa 322  Q
    |||||||    
T  9060473 ctaccaa 9060479  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 9275377 - 9275333
Alignment:
Q  239 gattcccacaaattcatcaaacttcacctccaaaattccctcaat 283  Q
    ||||||||||| |||||||| ||||| ||| ||||||||||||||    
T  9275377 gattcccacaacttcatcaaccttcatctcaaaaattccctcaat 9275333  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 349
Target Start/End: Original strand, 41965997 - 41966130
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    ||||||||| |||| |||||||||||||||| |||||||| |||||||||  ||| ||||||||||| | |||||||||||||| |||| | ||| ||||    
T  41965997 aatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcgactcaacactgatctcta 41966096  T
Q  319 ccaaatc---aacgatttctctaacctaaccacc 349  Q
    |||  ||    | |||||||||||||||||||||    
T  41966097 ccagttcgatgaggatttctctaacctaaccacc 41966130  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 26575753 - 26575650
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    |||||||| ||| | ||||||||||| ||||||||||||| |||||||||  |||||||| |||||| | |||||||||||||  ||| | |||| ||||    
T  26575753 aatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatcta 26575654  T
Q  319 ccaa 322  Q
    ||||    
T  26575653 ccaa 26575650  T

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Target: scaffold0667 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 325
Target Start/End: Complemental strand, 5333 - 5227
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    |||||||| ||||| |||||||||| ||||| |||||||| ||||||| | |||||||||||||| | | ||| |||||||||| ||  ||| || ||||    
T  5333 aatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttcgactcagatccaatatcta 5234  T
Q  319 ccaaatc 325  Q
    |||||||    
T  5233 ccaaatc 5227  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 37463396 - 37463293
Alignment:
Q  219 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 318  Q
    |||||||| ||||  |||||||||| ||||| |||||||| ||||| ||| ||||| |||||||||  | | ||||| ||||| ||||||||||| ||||    
T  37463396 aatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatcta 37463297  T
Q  319 ccaa 322  Q
    ||||    
T  37463296 ccaa 37463293  T

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