View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_low_18 (Length: 395)
Name: NF21245_low_18
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_18 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 44142642 - 44142266
Alignment:
| Q |
19 |
cgtctttctttgacatcaccaaaaatgctatcttatataatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaatt |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44142642 |
cgtctttctttgacatcacgaaaaatgctatcttatataatggttagtttattatgtaatgtataagttagtatgaataaacatatgtttggtttcaatt |
44142543 |
T |
|
| Q |
119 |
ttgggagtcaaaattattttagaacttggatttatggttttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44142542 |
ttgggagtcaaaattattttagaacttggatttatggttttattagggctataaagaatttacatagctccactttgttttctgggtgcaaatttcattt |
44142443 |
T |
|
| Q |
219 |
actctgaacatagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttca |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44142442 |
actctgaacatggttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttca |
44142343 |
T |
|
| Q |
319 |
cagttcattcaccagtgatccctcagggagacataattcaccccatttcctacctttttctccttacccttatcttt |
395 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44142342 |
cagttcactcaccactgatccctcagggagacataattcaccccatttcctacctttttctccttacccttatcttt |
44142266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 44121782 - 44121691
Alignment:
| Q |
25 |
tctttgacatcaccaaaaatgctatcttatataatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgg |
122 |
Q |
| |
|
||||||||||||| |||| |||||||| || ||||||||||||||| || || |||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
44121782 |
tctttgacatcacgaaaa-tgctatctaatttaatggttagtttatcatata-----taagttagcatgaataagcatatgtttggttttaattttgg |
44121691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 50063305 - 50062918
Alignment:
| Q |
19 |
cgtctttctttgacatcaccaaaaatgctatcttatataatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
50063305 |
cgtctttctttgacatcaccaaaaatgttatcttatataatggttagtttataatgtaatgtataagttagtatgaataagcctatgtttggtttcaatt |
50063206 |
T |
|
| Q |
119 |
ttgggagtcaaaattattttagaacttggatttatggttttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50063205 |
ttgggagtcaaaattattttagaacttggatttatggttttattagggctgtaaagaatttccatagctccactttgttttctgggtgcaaatttcattt |
50063106 |
T |
|
| Q |
219 |
actctgaacatagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50063105 |
actctgaacatagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttca |
50063006 |
T |
|
| Q |
319 |
cagttcattcaccagtgatccctcagggaga-----------cataattcaccccatttcctacctttttctccttacccttatcttt |
395 |
Q |
| |
|
|||||| |||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50063005 |
tagttcactcaccactgatccctcagggtgacgtccacacttcataattcaccccatttccaacctttttctccttacccttatcttt |
50062918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 50024442 - 50024351
Alignment:
| Q |
25 |
tctttgacatcaccaaaaatgctatcttatataatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgg |
122 |
Q |
| |
|
||||||||||||| |||| |||||||| || ||||||||||||||| || || |||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
50024442 |
tctttgacatcacgaaaa-tgctatctaatttaatggttagtttatcattta-----taagttagcatgaataagcatatgtttggttttaattttgg |
50024351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 50031560 - 50031469
Alignment:
| Q |
25 |
tctttgacatcaccaaaaatgctatcttatataatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgg |
122 |
Q |
| |
|
||||||||||||| |||| |||||||| || ||||||||||||||| || || |||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
50031560 |
tctttgacatcacgaaaa-tgctatctaatttaatggttagtttatcattta-----taagttagcatgaataagcatatgtttggttttaattttgg |
50031469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University