View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_19 (Length: 389)
Name: NF21245_low_19
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 33525542 - 33525631
Alignment:
| Q |
57 |
tgtattataacgatcatgttggtgtagaagagactcatcgtgacagcgaatcatcaagagctgtgttctcaaaatggttcatggttatgc |
146 |
Q |
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| T |
33525542 |
tgtattataacgatcatgttggtgtagaagagactcatcgcgacagcgaatcatcaagagctgtgttctcaaaatggttcatggtgatgc |
33525631 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 33525684 - 33525754
Alignment:
| Q |
199 |
ctgtggtgatggagaaatctctgtgcctcctccaaatgcattattgctcatgcgatgtaggtctgctccgg |
269 |
Q |
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| T |
33525684 |
ctgtggtgatggagaaatctctgtgcctcctccaaatgcattattgctcatgcgatgtaggtctgctccgg |
33525754 |
T |
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