View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_2 (Length: 793)
Name: NF21245_low_2
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 17 - 775
Target Start/End: Complemental strand, 1559960 - 1559202
Alignment:
| Q |
17 |
atacagaaaattgagtgatcaaccttgtcaaactcgagaatctagctaaactcgtggagcctccgtagactcgactcctaaacttgtaatagtttgccta |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1559960 |
atacagaaaattgagtgatcaaccttgtcaaattcgagagtctagctaaactcgtggagcctccgtagactcgaatcctaaacttgtaatagtttgccta |
1559861 |
T |
|
| Q |
117 |
aattacaacggttatacacattatcaacgagaaactacctgcaactaaattgtaattaattccaagctattgtgacaaactaatcctagttacaattaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559860 |
aattacaacggttatacacattatcaacgagaaactacctgtaactaaattgtaattaattccaagctattgtgacaaactaatcctagttacaattaat |
1559761 |
T |
|
| Q |
217 |
attaacattatcaacaagaccaatgattagtagaacaatcgtatcatgcactaacataatcaaaatcaaaatcaaaatcagacgatttttaacgcattca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559760 |
attaacattatcaacaagaccaatgattagtagaacaatcgtatcatgtactaacataatcaaaatcaaaatcaaaatcagacgatttttaacgcattca |
1559661 |
T |
|
| Q |
317 |
gagaaagagctacatataccacacgagtaatccaccaaattagtccctgatgttgtagagcgctctcaaacaggacctgactctattaatctgtccagtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559660 |
gagaaagagctacatataccacacgagtaatccaccaaattagtccctgatgttgtagagcgctctcaaacaggacctgactctattaatctgtccagtt |
1559561 |
T |
|
| Q |
417 |
gattcttatatttaaccacttactatcaattagtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559560 |
gattcttatatttaaccacttactatcaattagtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagt |
1559461 |
T |
|
| Q |
517 |
aaaatttgacagagtcgacgaacttgatgaattattcataatctcagtgacatagttgtgaacgtcctacaaagtcaatcaatgacataaatcaaaacgt |
616 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559460 |
aaaatttgacagagtcggcgaacttgatgaattattcataatctcagggacatagttgtgaacgtcctacaaagtcaatcaatgacataaatcaaaacgt |
1559361 |
T |
|
| Q |
617 |
tgaagtaaaaactatcataagcgactatttccttcggaatcacaaatcgtaagcaaaatcataatcagcgaagcaacttctcagaaaaggaagagtcaga |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559360 |
tgaagtaaaaactatcataagcgactatttccttcggaatcacaaatcgtaagcaaaatcataatcagcgaagcaacttctcagaaaaggaagagtcaga |
1559261 |
T |
|
| Q |
717 |
agaggacctggttgctcatccggtttcggccacaagaaatcaaccttagtagaaagaca |
775 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559260 |
agaggacctggttgctcatccggtttcggccacaagaaatcaaccttagtagaaagaca |
1559202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 683410 - 683465
Alignment:
| Q |
393 |
ctgactctattaatctgtccagttgattcttatatttaaccacttactatcaatta |
448 |
Q |
| |
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||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
683410 |
ctgactctattaaattgtcaagttgatccttatatttaaccacttattatcaatta |
683465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 532
Target Start/End: Original strand, 16494493 - 16494602
Alignment:
| Q |
423 |
tatatttaaccacttactatcaatta-gtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaat |
521 |
Q |
| |
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|||||||||| |||||||||||||| ||| || ||||||||||||||| |||||||||| || |||||| ||| |||||||| ||||||||||||| |
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| T |
16494493 |
tatatttaacaacttactatcaattttgtcgctgtatttaaccgcttactatcaatttagtctct-aacatactcttgtaatgacttatatgagtaaaat |
16494591 |
T |
|
| Q |
522 |
ttgacagagtc |
532 |
Q |
| |
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|| ||| |||| |
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| T |
16494592 |
ttcacatagtc |
16494602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 22994088 - 22994142
Alignment:
| Q |
395 |
gactctattaatctgtccagttgattcttatatttaaccacttactatcaattag |
449 |
Q |
| |
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||||||||||| ||||| ||||||| |||||||||||| | |||||||||||||| |
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| T |
22994088 |
gactctattaaactgtcaagttgatccttatatttaactatttactatcaattag |
22994142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 23794310 - 23794256
Alignment:
| Q |
395 |
gactctattaatctgtccagttgattcttatatttaaccacttactatcaattag |
449 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||| | |||||||||||||| |
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| T |
23794310 |
gactctattaaactgtcaagttgatccttatatttaactatttactatcaattag |
23794256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 534
Target Start/End: Original strand, 1896195 - 1896301
Alignment:
| Q |
427 |
tttaaccacttactatcaattag-tctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaatttga |
525 |
Q |
| |
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|||||| |||||||||||||| | |||||| |||| ||| ||||| ||||||||||||| ||||||||||| || || |||||||||| |||||| | |
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| T |
1896195 |
tttaactacttactatcaatttggtctctaagtttatccgattactaacaatttagtccc-taacatattctttaaaggattaatatgagt-aaatttaa |
1896292 |
T |
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| Q |
526 |
cagagtcga |
534 |
Q |
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||||||||| |
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| T |
1896293 |
cagagtcga |
1896301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 534
Target Start/End: Original strand, 35994129 - 35994213
Alignment:
| Q |
449 |
gtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaatttgacagagtcga |
534 |
Q |
| |
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||||||| ||||||| |||||| |||||||||| || |||||| | ||| |||||| |||||||| |||||||||||||||||| |
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| T |
35994129 |
gtctctatttttaaccacttactatcaatttagtctct-aacatactttcaaaatgacaaatatgagcaaaatttgacagagtcga |
35994213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 23058332 - 23058381
Alignment:
| Q |
398 |
tctattaatctgtccagttgattcttatatttaaccacttactatcaatt |
447 |
Q |
| |
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||||||||||||| ||||| | | ||||||||||||||||||||||||| |
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|
| T |
23058332 |
tctattaatctgttaagttggtccctatatttaaccacttactatcaatt |
23058381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 523
Target Start/End: Original strand, 6556608 - 6556704
Alignment:
| Q |
427 |
tttaaccacttactatcaa-ttagtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaattt |
523 |
Q |
| |
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|||||| |||||||||||| || || | || ||||||||||||||| |||||||||| || | |||| |||| ||||||||||||||||||||||| |
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| T |
6556608 |
tttaacaacttactatcaacttggtttttatatttaaccgcttactatcaatttagtctct-agcatactctcggaatgactaatatgagtaaaattt |
6556704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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