View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_21 (Length: 375)
Name: NF21245_low_21
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 12511380 - 12511029
Alignment:
| Q |
18 |
catatgttacagaaaatgtcatgtcttacattaaaaatat---aaggtcaccgaataattggatgtacttaacagttaacatattatttttgttggtaag |
114 |
Q |
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| T |
12511380 |
catatgttacagaaaatgtcatgtcttacattaaaaataatacaaggtcaccgaataattggatgtacttaacagttaacatattatttttgttggtaag |
12511281 |
T |
|
| Q |
115 |
gaatagttaaaatcatagtatatacttatatccatttgcattaccaacnnnnnnngt-ttgataagtcttatttcaaccgacaaaaatggttcgtatttg |
213 |
Q |
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| T |
12511280 |
gaatagttaaaatcatagtatacacttatatccatttgcattactaacaaaaaaaaaattgataagtcttatttcaaccgacaaaaatggtccgtattta |
12511181 |
T |
|
| Q |
214 |
aactcctccacttatgtttacgaatttttaaatgttattatcgtataatctattaagaaacaaaaacatgcatccaactgcattacactgagataatcat |
313 |
Q |
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|||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12511180 |
aactcctccatttatgtttatgagtttttaagcgttattatcgtataatctattaagaaacaaaaacatgcatccaactgcattacactgagataatcat |
12511081 |
T |
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| Q |
314 |
catcttggcaatatacacgaaaaatcataaatccattaacttctgtcctttg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12511080 |
catcttggcaatatacacgaaaaatcataaatccattaacttctgtcctttg |
12511029 |
T |
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