View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_23 (Length: 372)
Name: NF21245_low_23
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 222 - 368
Target Start/End: Complemental strand, 16459381 - 16459236
Alignment:
| Q |
222 |
aatgcacgtaggcttgagataccactagtcacatacatgcatcacagttaatatcaaatgaagttctcaaaaccatttagtaagatgatccaaaggatcg |
321 |
Q |
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| T |
16459381 |
aatgcacgtaggcttaagataccactagtcgcatacatgcatcacagttaatatcaaatgaagttctcaaaatcatttagtaagatgatccaaaggatcg |
16459282 |
T |
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| Q |
322 |
attctctcaaacacgcggaatgatccaaacaatatttttaacataac |
368 |
Q |
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| T |
16459281 |
attctctcaaacacgcggaatgatcc-aacaatatttttaacataac |
16459236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 16462824 - 16462735
Alignment:
| Q |
101 |
tttctttccaaaaggaagaaaggttagctcccaagtgttgtcatgttctgaggcttgcaattcagcttgtatatccaaattttaagcaaga |
191 |
Q |
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| T |
16462824 |
tttctttccaaaagggagaaatgttagctcccaagtgttgtcatgttcttaggcttgcaattcagcttgtggatccaaa-tttaagcaaga |
16462735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 16462910 - 16462976
Alignment:
| Q |
43 |
gttacacttggactggaggtattgactttatgggcactttctca---gtgtactttttgtatttctt |
106 |
Q |
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| T |
16462910 |
gttacacttggattggaggtattgactttatgggaactttctcaccggtgtactttttctacttctt |
16462976 |
T |
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