View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_25 (Length: 350)
Name: NF21245_low_25
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 10969517 - 10969196
Alignment:
| Q |
18 |
agttcatccaacaaaaaagtcccgcattacttggaaatcgactaatttcaacctcttcgagtccctttgtaaatttgtcatgcctttttaacaaccttct |
117 |
Q |
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| T |
10969517 |
agttcatccaacaaaaaagtcccgcattacttggaaatcgactaatttcaacctcttcgagtccctttgtaaatttgtcatgcctttttaacaaccttct |
10969418 |
T |
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| Q |
118 |
cgaactctctaaaagaaacttgtcaacaaatttttcatcagaaagcattgaagcaagcatgtattgagtttgagatgagactaatccaaagcttgacatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969417 |
cgaactctctaaaagaaacttgtcaacaaatttttcatcagaaagcattgaagcaagcatgtattgagtttgagatgagactaatccaaagcttgacatt |
10969318 |
T |
|
| Q |
218 |
ttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaaccaggaaaccctaagtctttcgataaactataaataacatgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969317 |
ttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaaccaggaaaccctaagtctttcgataaactataaataacatgaa |
10969218 |
T |
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| Q |
318 |
tgagatcaaggttgcacttcat |
339 |
Q |
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| T |
10969217 |
tgagatcaaggttgcacttcat |
10969196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 300
Target Start/End: Original strand, 7754464 - 7754706
Alignment:
| Q |
53 |
aatcgactaatttcaacctcttcgagtccctttgtaaatttgtcatgcctttttaacaaccttctcgaactctctaaaagaaacttgtcaacaaattttt |
152 |
Q |
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| T |
7754464 |
aatcaactaatttcaacctcttcaagtcc-tctgtaaatttttcatgcctttttaacaacgttcttgagctctctaaactaaatgtgtcaacaaattttt |
7754562 |
T |
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| Q |
153 |
catcagaaagcattgaa---gcaagcatgtattgagtttgagatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgta |
249 |
Q |
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| T |
7754563 |
cattacaaagcattgaaggcgcagacatatgttgagttt-------gactaatccaaaacttgacattttccttacacaattcactgcatgatcttttta |
7754655 |
T |
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| Q |
250 |
tgaataaactatcccaaccctaaaaccaggaaaccctaagtctttcgataa |
300 |
Q |
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| T |
7754656 |
tgaataaactattccaaccctaaaattagggaaccctaagtcctttgataa |
7754706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 324
Target Start/End: Original strand, 29963865 - 29963998
Alignment:
| Q |
191 |
gatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaaccaggaaaccctaagt |
290 |
Q |
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|||||||||||||||||||| |||||||| || || || ||||| |||| ||| ||||| |||||||| | ||||| |||||||| |||| || | || |
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| T |
29963865 |
gatgagactaatccaaagctcgacatttttctaccgcagttcacaacttcatcgttgtacgaataaaccaaaccaactctaaaacccggaagacccatgt |
29963964 |
T |
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| Q |
291 |
ctttcgataaactataaataacatgaatgagatc |
324 |
Q |
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|||| ||||||||||| |||| ||||||||||| |
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| T |
29963965 |
cttttgataaactatagataatgtgaatgagatc |
29963998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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