View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_31 (Length: 331)
Name: NF21245_low_31
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5269622 - 5269940
Alignment:
| Q |
1 |
accttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatttgatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
5269622 |
accttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtgggatttgatatg |
5269721 |
T |
|
| Q |
101 |
caaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgctgaagttgattaacaaaatagtgatggag |
200 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
5269722 |
caaagatccttcacttgttaaggctgaaattcatggttggagtgatggagaagaattggaacaagttttgatgaatttgattaacaaaattatgatggag |
5269821 |
T |
|
| Q |
201 |
gaacatgttcagttcattgcatctgactgcaagatagctacaaactctatttgttcccgttcaccagtcattgcctaaa-ttgggccttaaattcttagt |
299 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5269822 |
gaacatgttcaattcattgcatctgactgcaagctagctacaaactctatttgttcccgttcaccagtcattgcctaaagttgggccttaaattcttagt |
5269921 |
T |
|
| Q |
300 |
ttttgtgttagatgtttct |
318 |
Q |
| |
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||||||||||||||||||| |
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| T |
5269922 |
ttttgtgttagatgtttct |
5269940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5276040 - 5275808
Alignment:
| Q |
1 |
accttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatttgatatg |
100 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
5276040 |
accttggtgatggtgcaggggactattgccctagtttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtgggatttgatatg |
5275941 |
T |
|
| Q |
101 |
caaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgctgaagttgattaacaaaatagtgatggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
5275940 |
caaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgatgaatttgattaacaaaattatgatggag |
5275841 |
T |
|
| Q |
201 |
gaacatgttcagttcattgcatctgactgcaag |
233 |
Q |
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||||||||||| || ||| |||| || |||||| |
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| T |
5275840 |
gaacatgttcaatttatttcatcagattgcaag |
5275808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 5272051 - 5271898
Alignment:
| Q |
1 |
accttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatttgatatg |
100 |
Q |
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|
||||||||||||||||||| || |||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
5272051 |
accttggtgatggtgctggagattattgccctagcttgaggtttaaagagagagactttgtgatgccaaggaagaattttccagtgtgggatttgatatg |
5271952 |
T |
|
| Q |
101 |
caaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
154 |
Q |
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|||||| ||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
5271951 |
caaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5271898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 5251778 - 5251931
Alignment:
| Q |
1 |
accttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatttgatatg |
100 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||| || ||||||||||| | ||| || |||||||||||||||| |||||||| |||||||||||||| |
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| T |
5251778 |
accttggtgatggcattggagattattgtcctagtttaaggcttagagagaaagatttcatgatgccaaggaagaattttccagtgtgggatttgatatg |
5251877 |
T |
|
| Q |
101 |
caaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
154 |
Q |
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|||||| ||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
5251878 |
caaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5251931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 14945052 - 14945163
Alignment:
| Q |
5 |
tggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatttgatatgcaaa |
104 |
Q |
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|||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| ||| |
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| T |
14945052 |
tggtgatggtattggagactattgccctagtttgagacttagagaaagagactttgttatgtcaaggaagaactttccagtatgggacttgatatgaaaa |
14945151 |
T |
|
| Q |
105 |
gatccttcactt |
116 |
Q |
| |
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|| |||| |||| |
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| T |
14945152 |
gaccctttactt |
14945163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 26314447 - 26314296
Alignment:
| Q |
3 |
cttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatttgatatgca |
102 |
Q |
| |
|
|||||||||||| ||| || ||||| || ||||| || |||| ||||| |||||||||||||||||||||||| ||||| || ||||| |||||||||| |
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| T |
26314447 |
cttggtgatggtagtggagattattgtccaagcttaagccttaaagaaaaagactttgtgatgccaaggaagaattttcctgtatgggacttgatatgca |
26314348 |
T |
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| Q |
103 |
aagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
154 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||| ||||||||||||||||| |
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| T |
26314347 |
aagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaaga |
26314296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 43109396 - 43109245
Alignment:
| Q |
3 |
cttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatttgatatgca |
102 |
Q |
| |
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||||| |||||| ||| || ||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||||| || |||||||| || |||| |
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| T |
43109396 |
cttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtgggatttaatttgca |
43109297 |
T |
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| Q |
103 |
aagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
154 |
Q |
| |
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|||||||||||||||| |||||| ||||| ||| ||||||||||| ||||| |
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| T |
43109296 |
aagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaaga |
43109245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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