View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_32 (Length: 328)
Name: NF21245_low_32
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 44683574 - 44683272
Alignment:
| Q |
19 |
aattcttccctcaagcaaggcttcgtgtttaatttaaggatataccgtaaatgaatgattacttgatttcatctaaaatattgttttggtgatg---tta |
115 |
Q |
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| T |
44683574 |
aattcttaactcaagcaaggcttcgtgtttaatttaagaatataccgtaaatgaatgattacttgatttcatctaaaatattgttttggtgatgatgtta |
44683475 |
T |
|
| Q |
116 |
caggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgcccatctccttgcggtgttgtgataactc |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683474 |
caggctctaaaggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgcccatctccttgcggtgttgtgataactc |
44683375 |
T |
|
| Q |
216 |
gtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcct |
315 |
Q |
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| T |
44683374 |
gtttgaaatacatgagtgcgatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcct |
44683275 |
T |
|
| Q |
316 |
ttg |
318 |
Q |
| |
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||| |
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| T |
44683274 |
ttg |
44683272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 83 - 318
Target Start/End: Complemental strand, 44660362 - 44660127
Alignment:
| Q |
83 |
gatttcatctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgg |
182 |
Q |
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| T |
44660362 |
gattttatctaaaattttgctttgctgattgaataggctccaaggattagcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgg |
44660263 |
T |
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| Q |
183 |
gatgcccatctccttgcggtgttgtgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcac |
282 |
Q |
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|||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44660262 |
gatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaatgcactatctagagatgttgacatcattgcttcaagggatgccacaatcac |
44660163 |
T |
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| Q |
283 |
aggtagccgttgtgggcatgctcccatcttcctttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44660162 |
aggtagccgttgtgggcatgctcccatcttcctttg |
44660127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 318
Target Start/End: Original strand, 29357453 - 29357683
Alignment:
| Q |
88 |
catctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgc |
187 |
Q |
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|||||||||| || |||||||||| ||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
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| T |
29357453 |
catctaaaattttattttggtgattttataggctctaaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgc |
29357552 |
T |
|
| Q |
188 |
ccatctccttgcggtgttgtgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggta |
287 |
Q |
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|||| |||||| |||||| ||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
29357553 |
ccatttccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctacaatcacaggta |
29357652 |
T |
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| Q |
288 |
gccgttgtgggcatgctcccatcttcctttg |
318 |
Q |
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||||| ||||||||||||| ||||| ||||| |
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| T |
29357653 |
gccgtagtgggcatgctccaatctttctttg |
29357683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 88 - 318
Target Start/End: Original strand, 29341426 - 29341656
Alignment:
| Q |
88 |
catctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgc |
187 |
Q |
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|||||||||| || |||||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
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| T |
29341426 |
catctaaaattttattttggtgattgtgtaggctctaaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgc |
29341525 |
T |
|
| Q |
188 |
ccatctccttgcggtgttgtgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggta |
287 |
Q |
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||||||||||| |||||| ||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
29341526 |
ccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctaccatcacaggta |
29341625 |
T |
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| Q |
288 |
gccgttgtgggcatgctcccatcttcctttg |
318 |
Q |
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||||| ||||||||||||| ||||| ||||| |
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| T |
29341626 |
gccgtagtgggcatgctccaatcttactttg |
29341656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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