View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_low_33 (Length: 322)
Name: NF21245_low_33
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_33 |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 51751439 - 51751732
Alignment:
| Q |
29 |
taatcttcatctccatcaacatcatctccatcaccagactcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgaga |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51751439 |
taatcttcatctccatcaacatcatctccatcaccagactcagcaccaacctcctcataatccttctcaagagcagcgagatcttcacgagcctctgaga |
51751538 |
T |
|
| Q |
129 |
actcaccttcttccataccctcaccaacataccaatgcacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagc |
228 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51751539 |
actcaccttcttccataccctcaccaacataccaatgcacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagc |
51751638 |
T |
|
| Q |
229 |
aacactggtagagttagagatcatgcacacggccctctgcaccttggcaagatcaccaccaggaacaacagtaggaggctggtaattgatacca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51751639 |
aacactggtagagttagagatcatgcacacggccctctgcaccttggcaagatcaccaccaggaacaacagtaggaggctggtaattgatacca |
51751732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 166 - 322
Target Start/End: Complemental strand, 28713936 - 28713780
Alignment:
| Q |
166 |
cacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctc |
265 |
Q |
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|||||| |||||||| |||||||| ||||||||||| ||||| || | |||||||||||| ||||| || ||||| || |||||||| || |||||| |
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| T |
28713936 |
cacaaatgcacgcttggcatacatcagatcaaacttgtgatcgatgcgaccaaacacctcagctacacttgtggagtttgaaatcatgcaaactgccctc |
28713837 |
T |
|
| Q |
266 |
tgcaccttggcaagatcaccaccaggaacaacagtaggaggctggtaattgatacca |
322 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||||||||||| ||||| || || |||||| |
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|
| T |
28713836 |
tgtaccttagcaaggtcaccaccaggaacaacagtaggtggctgatagttaatacca |
28713780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 51751347 - 51751314
Alignment:
| Q |
1 |
cattgtgctgtgtttagcacaaaaactttaatct |
34 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
51751347 |
cattgtgctgtgtttagcacaaaaactttaatct |
51751314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 80 - 321
Target Start/End: Original strand, 18306273 - 18306514
Alignment:
| Q |
80 |
tcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaaaagcacgct |
179 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
18306273 |
tcctcatactccttctcgagagcagcaagatcctcacgagcctgtgataactcaccttcttccataccctcacacacataccagtgcacaaaagcacgct |
18306372 |
T |
|
| Q |
180 |
tagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctctgcaccttggcaag |
279 |
Q |
| |
|
| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
18306373 |
tggcatacataagatcgaacttatggtcaattctggaaaacacttgagcaacactggtagagttagagatcattcctacagccctctgcaccttggcaag |
18306472 |
T |
|
| Q |
280 |
atcaccaccaggaacaacagtaggaggctggtaattgatacc |
321 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||||| |
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|
| T |
18306473 |
atcaccaccaggaacaacagttcgaggataataattgatacc |
18306514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 80 - 321
Target Start/End: Complemental strand, 18163010 - 18162769
Alignment:
| Q |
80 |
tcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaaaagcacgct |
179 |
Q |
| |
|
|||||||| |||| ||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
18163010 |
tcctcatactcctactcgagagcagcaagatcctcacgagcctgtgataactcaccttcttccataccctcacacacataccagtgcacaaaagcacgct |
18162911 |
T |
|
| Q |
180 |
tagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctctgcaccttggcaag |
279 |
Q |
| |
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| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
18162910 |
tggcatacataagatcgaacttatggtcaatactggaaaacacttgagcaacactggtagagttagagatcattcctacagccctctgcaccttggcaag |
18162811 |
T |
|
| Q |
280 |
atcaccaccaggaacaacagtaggaggctggtaattgatacc |
321 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||||| |
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| T |
18162810 |
atcaccaccaggaacaacagttcgaggataataattgatacc |
18162769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 318
Target Start/End: Original strand, 40376914 - 40377161
Alignment:
| Q |
71 |
gcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaa |
170 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||| || ||||| ||||||||||| |||| |
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| T |
40376914 |
gcaccaacttcctcataatccttctcaagggcagcaagatcttcacgagcctcagagaactcgccttcttccatcccttcaccgacataccaatgtacaa |
40377013 |
T |
|
| Q |
171 |
aagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctctgcac |
270 |
Q |
| |
|
| || | ||| |||||||| || ||||| || || ||||| | || || |||||||||||||| || ||||| || ||||||||||||||||||||||| |
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|
| T |
40377014 |
atgccctcttggcatacatgaggtcaaatttgtggtcaatgcgtgagaaaacctcagcaacactagtggagttggaaatcatgcacacggccctctgcac |
40377113 |
T |
|
| Q |
271 |
cttggcaagatcaccaccaggaacaacagtaggaggctggtaattgat |
318 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
40377114 |
cttggcaagatcaccccctggaacaacagttggaggctgataattgat |
40377161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 322
Target Start/End: Original strand, 47927599 - 47927862
Alignment:
| Q |
59 |
tcaccagactcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacat |
158 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| || | |||||| ||||||||||| || || || || || |||||||||||||||||||| |||| |
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|
| T |
47927599 |
tcaccagactcggcaccaacttcttcataatccttttccaaagcagcaagatcctcacgggcttcagaaaattctccttcttccataccctcacccacat |
47927698 |
T |
|
| Q |
159 |
accaatgcacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacac |
258 |
Q |
| |
|
|||| || |||||||||||||| |||||||| ||||||||||| |||||||| | |||||||||||| ||||| || ||||| || |||||||| || |
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|
| T |
47927699 |
accagtgaacaaaagcacgcttggcatacatcagatcaaacttgtgatcaatgcgaccaaacacctcagctacacttgtggagtttgaaatcatgcaaac |
47927798 |
T |
|
| Q |
259 |
ggccctctgcaccttggcaagatcaccaccaggaacaacagtaggaggctggtaattgatacca |
322 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
47927799 |
tgccctctgtaccttagcaaggtcaccaccaggaacaacagtaggaggctggtagttaatacca |
47927862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 322
Target Start/End: Original strand, 35668821 - 35669076
Alignment:
| Q |
67 |
ctcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgc |
166 |
Q |
| |
|
|||||||||||| || |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| ||||||||||| |||||||| |||||||| || |
|
|
| T |
35668821 |
ctcagcaccaacttcttcataatctttctcgagagcagcaagatcttcacgggcttctgagaactccccttcttccatgccctcaccgacataccagtga |
35668920 |
T |
|
| Q |
167 |
acaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctct |
266 |
Q |
| |
|
||||| || | ||| |||||||| ||||| ||||| |||||||| | ||| || ||||| |||||| || |||| |||||| || || || || | |
|
|
| T |
35668921 |
acaaaggctctcttggcatacatcagatcgaacttgtgatcaatgcgggagaagacctccgcaacagcagtgttgttactgatcatacaaacagctcttt |
35669020 |
T |
|
| Q |
267 |
gcaccttggcaagatcaccaccaggaacaacagtaggaggctggtaattgatacca |
322 |
Q |
| |
|
| ||||| ||||| ||||| ||||| ||||| | ||||||||| || ||||||||| |
|
|
| T |
35669021 |
gtaccttagcaaggtcacctccaggcacaactgaaggaggctgatagttgatacca |
35669076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 10031091 - 10031232
Alignment:
| Q |
72 |
caccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaaa |
171 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| ||||| || | ||| ||||| || |||||||||||||| || |||| |||||||||||||||||| |
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|
| T |
10031091 |
caccaacttcatcataatccttttcaagagcagcaagatcttctctagcttctgaaaattcaccttcttccattccttcactaacataccaatgcacaaa |
10031190 |
T |
|
| Q |
172 |
agcacgcttagcatacataagatcaaacttatgatcaatcct |
213 |
Q |
| |
|
|| | || ||||||||||||||||| || ||||||||||| |
|
|
| T |
10031191 |
tgctctttttgcatacataagatcaaatttgtgatcaatcct |
10031232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 33271192 - 33271050
Alignment:
| Q |
68 |
tcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgca |
167 |
Q |
| |
|
||||| ||||| || ||||| ||||| ||||||||||| |||||||| | || || || || |||||||||||||| || ||||||||||||||||| | |
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|
| T |
33271192 |
tcagctccaacttcttcatagtccttttcaagagcagcaagatcctccctggcttccgaaaattcaccttcttccattccttcaccaacataccaatgta |
33271093 |
T |
|
| Q |
168 |
caaaagcacgcttagcatacataagatcaaacttatgatcaat |
210 |
Q |
| |
|
|||| || | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
33271092 |
caaatgcccttttagcatacatgagatcaaatttatgatcaat |
33271050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 28693626 - 28693557
Alignment:
| Q |
122 |
tctgagaactcaccttcttccataccctcaccaacataccaatgcacaaaagcacgcttagcatacataa |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
28693626 |
tctgagaactcacattcttccataccctcacatgcataccagtgcacaaaagcacgtttagcatacataa |
28693557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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