View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_4 (Length: 701)
Name: NF21245_low_4
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 47363495 - 47363658
Alignment:
| Q |
83 |
ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtg |
182 |
Q |
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| T |
47363495 |
ttgagctagattctaagctagtggctgatagcatagttgataggccgaataatcagttggaatttgataatattatgtctcgttgtagatcatttttgtg |
47363594 |
T |
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| Q |
183 |
tcattttccaaacttataaagaaattgtgtcgccca----taacctagcaagagtgtcaaaatt |
242 |
Q |
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| T |
47363595 |
tcatttttcaaacttataaagaaattgtgtcgcccatagctagcctagcaagagtgtcaaaatt |
47363658 |
T |
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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 4816742 - 4816823
Alignment:
| Q |
204 |
aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt |
285 |
Q |
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| T |
4816742 |
aaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagtctttgatttgatttcatcttatatt |
4816823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 34711638 - 34711561
Alignment:
| Q |
118 |
gttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaac |
195 |
Q |
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| T |
34711638 |
gttgataggtccaataatcagtcggaatttagtaatattatgtctcgatgtagatcactattgtgtcatgttccaaac |
34711561 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 33508409 - 33508590
Alignment:
| Q |
13 |
agcataggcaatggggttgtctgatgccatctcatggttttgatcaattgagattatcgaaggtgctaaattgagttagattgtaagctagtggctgata |
112 |
Q |
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| T |
33508409 |
agcataggcaatgggcttgcgtgacgccatcttatggctt-gatcaattggaactatcaaaggtgc-aaattgagcttgattgtaagttagtagtgggta |
33508506 |
T |
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| Q |
113 |
gcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaactt |
197 |
Q |
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| T |
33508507 |
tcatatttgataggtccaataatcggtcaaaatttgataatattatgt-ttggtgtagatcactattgtgtcattttctaaactt |
33508590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 25500985 - 25501066
Alignment:
| Q |
204 |
aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt |
285 |
Q |
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| T |
25500985 |
aaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatttgattccatcttgtatt |
25501066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 1930009 - 1930046
Alignment:
| Q |
89 |
tagattgtaagctagtggctgatagcatagttgatagg |
126 |
Q |
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| T |
1930009 |
tagattgtaagctagtggttgatagcatagttgatagg |
1930046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 8690337 - 8690409
Alignment:
| Q |
83 |
ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat |
155 |
Q |
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| T |
8690337 |
ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat |
8690409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 9042206 - 9042278
Alignment:
| Q |
83 |
ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat |
155 |
Q |
| |
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| T |
9042206 |
ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat |
9042278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 41732461 - 41732514
Alignment:
| Q |
232 |
gtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt |
285 |
Q |
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||||||| |||| |||||| ||||||||| |||||||||||||||||||||||| |
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| T |
41732461 |
gtgtcaagattgcatgctcgtcatcaagtttttgatttgatttcatcttgtatt |
41732514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 43391132 - 43391063
Alignment:
| Q |
204 |
aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatt |
273 |
Q |
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||||| ||||||||||| ||||||| ||||||||| |||||||| |||||| || |||||||||||| |
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| T |
43391132 |
aaattatgtcgcccatactttagcaagggtgtcaaaactgtatgctagtcatcatgtttttgatttgatt |
43391063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 22642889 - 22642806
Alignment:
| Q |
204 |
aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtattta |
287 |
Q |
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| T |
22642889 |
aaattatgtcgcccatcgcttagcgagggagtcgaatttgtatgctagtcaccaagtatttgatttgatttcatcttgtattta |
22642806 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 1069095 - 1069058
Alignment:
| Q |
89 |
tagattgtaagctagtggctgatagcatagttgatagg |
126 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| |
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| T |
1069095 |
tagattgtaagctagtggatgatagcatagttcatagg |
1069058 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 29370290 - 29370327
Alignment:
| Q |
89 |
tagattgtaagctagtggctgatagcatagttgatagg |
126 |
Q |
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|||||||||||||||||| |||||||||| |||||||| |
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| T |
29370290 |
tagattgtaagctagtggttgatagcataattgatagg |
29370327 |
T |
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