View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_low_42 (Length: 267)
Name: NF21245_low_42
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_42 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38320551 - 38320303
Alignment:
| Q |
1 |
caacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320551 |
caacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatt |
38320452 |
T |
|
| Q |
101 |
tataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaaggatcata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38320451 |
tataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcaaaaaaatcaaagggaaaatcatttgaaaggatcata |
38320352 |
T |
|
| Q |
201 |
gaagcacaccttttaaccaaccataattgatctatctcgccaatagatt |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38320351 |
gaagcacaccttttaactaaccataattgatctatctcgccaatagatt |
38320303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 38305721 - 38305518
Alignment:
| Q |
5 |
agttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| ||||||||||||| |||||||| || | |
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|
| T |
38305721 |
agttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaataacatctaca |
38305622 |
T |
|
| Q |
105 |
ggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaaggatcatagaag |
204 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38305621 |
ggaggcaaaacaatatttggatttaagaccttcatgaagttcctcatcccctcgcgctcaaaaaactcaaagggaaaatcatttgaaaggatcatagaag |
38305522 |
T |
|
| Q |
205 |
caca |
208 |
Q |
| |
|
|||| |
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|
| T |
38305521 |
caca |
38305518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 38316449 - 38316322
Alignment:
| Q |
5 |
agttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttata |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||| ||| |||||||||| |||||||||| | |
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|
| T |
38316449 |
agttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtc |
38316350 |
T |
|
| Q |
105 |
ggaggcataacagcatttggatttaaga |
132 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
38316349 |
ggaggtataacagcatttggatttaaga |
38316322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 38313040 - 38312910
Alignment:
| Q |
5 |
agttaaagatatcctatt----aggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||| || |||||| |
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|
| T |
38313040 |
agttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcctcaagaacatt |
38312941 |
T |
|
| Q |
101 |
tataggaggcataacagcatttggatttaag |
131 |
Q |
| |
|
| ||||||||||||| |||||||||||||| |
|
|
| T |
38312940 |
tgaaggaggcataacaacatttggatttaag |
38312910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 38325294 - 38325169
Alignment:
| Q |
5 |
agttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttata |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| | ||||||||||| |||||||||| || |
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|
| T |
38325294 |
agttaaagataccctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaataacatttgta |
38325195 |
T |
|
| Q |
105 |
ggaggcataacagcatttggatttaa |
130 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
38325194 |
ggaggtataacagcatttcgatttaa |
38325169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 38299802 - 38299730
Alignment:
| Q |
5 |
agttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatcc |
77 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
38299802 |
agttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcc |
38299730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 38308453 - 38308385
Alignment:
| Q |
6 |
gttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaa |
74 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || ||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
38308453 |
gttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 38850899 - 38851023
Alignment:
| Q |
8 |
taaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttatagga |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| || || ||||| | ||||||||| ||||| |
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|
| T |
38850899 |
taaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctagga |
38850998 |
T |
|
| Q |
108 |
ggcataacagcatttggatttaaga |
132 |
Q |
| |
|
|| ||| | |||||||||||||| |
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|
| T |
38850999 |
ggtataggaatatttggatttaaga |
38851023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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