View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_46 (Length: 254)
Name: NF21245_low_46
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 14333289 - 14333514
Alignment:
| Q |
11 |
agaatatatattaggtgtctagatttctaaaactatagtactaacagagagaaattagagaaaaagagaatggatatgattttaactcacaagtgatttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14333289 |
agaatatatattaggtgtctagatttctaaaactatagtactaacagagagaaattagagaaaaagagaatggatatgattttaactcacaagtgatttt |
14333388 |
T |
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| Q |
111 |
gattttcatgtttattttattcgaccaaaacatttatattgttaaggggtacatctatgatcgcgttctccgttcgattcttctagcagcagtttttagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14333389 |
gattttcatgtttattttattcgaccaaaacatttatattgttaaggggtacatctatgatcgcgttctccgttcgattcttctagcagcagtttttagc |
14333488 |
T |
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| Q |
211 |
ctggtccttgctttgatccgcccggt |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14333489 |
ctggtccttgctttgatccgcccggt |
14333514 |
T |
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Back To:
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Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 53088551 - 53088748
Alignment:
| Q |
11 |
agaatatatattaggtgtctagatttctaaaactatagtactaacagagagaaattagagaaaaagagaatggatatgattttaactcacaagtgatttt |
110 |
Q |
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|||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| || | | |||||| ||||||| |||||| |||||||||| |
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| T |
53088551 |
agaatatatattaggtatctagatttccaaaacaatagtactaacagagagaaattagag-aatataaaatggaaatgatttcaactcataagtgatttt |
53088649 |
T |
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| Q |
111 |
gatttt-catgtttattttattcgaccaaaacatttatattgttaaggggtacatctatgatcgcgttctcc---gttcgattcttctagcagcagttt |
205 |
Q |
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|||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| | |||||| ||| |||||| ||||||||||||| |
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| T |
53088650 |
gattttccatgtttattttattcgatcaaaacatttgtattgttaaggggtacatctacgatctccttctccccagttggattctgctagcagcagttt |
53088748 |
T |
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