View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_5 (Length: 621)
Name: NF21245_low_5
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Complemental strand, 34928250 - 34927660
Alignment:
| Q |
19 |
gaatctcgttaatttagttgaatcttatgaacattcttctcggagattttaaactatactagcaaaatgcaggctatggttatggattttcgttaatttt |
118 |
Q |
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| T |
34928250 |
gaatctcgttaatctagttgaatcttgtgaacattcttctcagagattttaaactatactagcaaaatgcaggttatggttatggattttcgttaatttt |
34928151 |
T |
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| Q |
119 |
accaggttaccctctatatctacacattcaaaattgatacttgattagtttcactttgaaatttgagtgtgtgaaagtgtaacatgtaatatgtaatttg |
218 |
Q |
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| T |
34928150 |
accaggttaccctccatatctacacattcaaaattgatacttgattagtttcactttgaaatttgagtgtgtgaaagtgtaacatgtaatatgtaatttg |
34928051 |
T |
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| Q |
219 |
tttctgagagtaaatttgggttcttttgatagcatatggagggtttctattgtaatatagagaaaagggtagttttgaatcttgaggagagtatttaatt |
318 |
Q |
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| T |
34928050 |
tttctgagagtaaatttggtttcttttgatagcatatggagggtttctattgtaatatagagaaaagggtagttttgaatcttgaggagagtatttaatt |
34927951 |
T |
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| Q |
319 |
ctactcttcttctgaagtgtttgttgactatctttgagtttctcttggatatgtaatttaagtgatttttgttcaatcactaactagtttatttgtcatc |
418 |
Q |
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| T |
34927950 |
ctactcttcttgtgaagtgtttgttgactatctttgagtttctcttggatatgtaatttaagtgatttttgttcaatcactaactagtttatttgtcatc |
34927851 |
T |
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| Q |
419 |
cattacaatatatgcaaaagttcttgataaattctttgaaatgtaaattcttttttctggattcatttattcattttcttcatcttgagcctgatgcgtg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34927850 |
cattacaatatatgcaaaagttcttgataaattctttgaaatgtaaattcttttttctggattcatttattcattttcttcatcttgagcctgatgtgtg |
34927751 |
T |
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| Q |
519 |
tgctcaacaaataactacaccatcttcaagttttctgtttagcatgatattcatgtctccctgccccgagttctattgatatttacgccta |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
34927750 |
tgctcaacaaataactacaccatcttcaagttttctgtttagcatgatattcatgtctccctgctctgagttctattgatatttacgccta |
34927660 |
T |
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