View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21245_low_52 (Length: 249)

Name: NF21245_low_52
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21245_low_52
NF21245_low_52
[»] chr6 (7 HSPs)
chr6 (106-227)||(25524764-25524885)
chr6 (106-227)||(26047219-26047338)
chr6 (106-227)||(26049244-26049363)
chr6 (106-227)||(26065528-26065647)
chr6 (106-227)||(26070413-26070532)
chr6 (106-227)||(26085497-26085616)
chr6 (106-196)||(25516543-25516633)
[»] chr4 (3 HSPs)
chr4 (31-77)||(23499443-23499489)
chr4 (16-72)||(29391162-29391218)
chr4 (16-77)||(9521884-9521945)
[»] chr7 (3 HSPs)
chr7 (16-77)||(19267374-19267435)
chr7 (25-77)||(30969761-30969813)
chr7 (16-77)||(38603007-38603068)
[»] chr8 (1 HSPs)
chr8 (31-77)||(39421528-39421574)
[»] chr2 (1 HSPs)
chr2 (16-79)||(35112498-35112560)
[»] chr1 (1 HSPs)
chr1 (25-77)||(3279409-3279461)


Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 25524764 - 25524885
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||| |||||||||||| ||||||||    
T  25524764 ctgctatttttccctctcctgatttcttccttcccctctcatgtctcacatatcgtctccctccacctctttttctgtctgtgattgttcgcataacaat 25524863  T
Q  206 gcaataaaaaacgggagttggc 227  Q
    |||| |||| | | ||||||||    
T  25524864 gcaacaaaacatgagagttggc 25524885  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 26047219 - 26047338
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26047219 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26047316  T
Q  206 gcaataaaaaacgggagttggc 227  Q
    |||| |||| | | ||||||||    
T  26047317 gcaacaaaacatgagagttggc 26047338  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 26049244 - 26049363
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26049244 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26049341  T
Q  206 gcaataaaaaacgggagttggc 227  Q
    |||| |||| | | ||||||||    
T  26049342 gcaacaaaacatgagagttggc 26049363  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 26065528 - 26065647
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26065528 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26065625  T
Q  206 gcaataaaaaacgggagttggc 227  Q
    |||| |||| | | ||||||||    
T  26065626 gcaacaaaacatgagagttggc 26065647  T

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Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 26070413 - 26070532
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26070413 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26070510  T
Q  206 gcaataaaaaacgggagttggc 227  Q
    |||| |||| | | ||||||||    
T  26070511 gcaacaaaacatgagagttggc 26070532  T

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Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 26085497 - 26085616
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 205  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26085497 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26085594  T
Q  206 gcaataaaaaacgggagttggc 227  Q
    |||| |||| | | ||||||||    
T  26085595 gcaacaaaacatgagagttggc 26085616  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 25516543 - 25516633
Alignment:
Q  106 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcg 196  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||| | ||||||||||    
T  25516543 ctgctatttttccctttcctgatttctcccttccactctcatgtctcacttatcatctccctccatctctttttctgtctttgattgttcg 25516633  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 23499489 - 23499443
Alignment:
Q  31 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  23499489 gtaaagtgagaaaattaagggttgttattttaacaaactcatgattt 23499443  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 29391162 - 29391218
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcat 72  Q
    |||| ||||||||| ||||||| |||||| | |||||||||||| ||||||||||||    
T  29391162 taaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat 29391218  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 9521945 - 9521884
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||| ||| ||||| ||||||||||||||  || |||||| | |||||||||||||||||||    
T  9521945 taaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgattt 9521884  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 19267435 - 19267374
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  19267435 taaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 30969761 - 30969813
Alignment:
Q  25 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgattt 30969813  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 38603007 - 38603068
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    |||| ||||| ||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  38603007 taaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgattt 38603068  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 39421528 - 39421574
Alignment:
Q  31 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  39421528 gtaaagtgagaaaatcaaaggttgttattttaacaaactcatgattt 39421574  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 35112498 - 35112560
Alignment:
Q  16 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattttt 79  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  35112498 taaattggttaaagtgtaaagtgagaaaa-taagggttgttattataacaagctcataattttt 35112560  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 3279409 - 3279461
Alignment:
Q  25 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 77  Q
    ||||| ||||||||||||||  |||||||||| ||| |||||||| |||||||    
T  3279409 taaagtgtaaagtgagaaaatgaagggttgttttttaaacaaacttatgattt 3279461  T

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