View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_53 (Length: 245)
Name: NF21245_low_53
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_53 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 37280937 - 37281164
Alignment:
| Q |
18 |
gcaaaacccctaacactaccactcctacaaattattaagcatagagttagacggcgtaggttaacttatcaagatttgaaaaatcttgcagtgtatagaa |
117 |
Q |
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| T |
37280937 |
gcaaaacccctaacactaccactcctacaaattattaagcatagagttagacggcgtaggttaacttatcaagatttgaaaaatcttgcagtgtatagaa |
37281036 |
T |
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| Q |
118 |
tggttttaaattgcagtctgcaaccccaattgtggccgcaatataaaatattttgaagtctctgcaatggcattgctaccgcagtttttactaaatcggt |
217 |
Q |
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| T |
37281037 |
tggttttaaattgcagtctgcaaccccaattgtggccgcaatataaaatattttgaagtctctgcaatggcattgcaaccgcagtttttactaaatcggt |
37281136 |
T |
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| Q |
218 |
agcattttgccgcaatataaaggtttgc |
245 |
Q |
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| T |
37281137 |
agcattttgccgcaatataaaggtttgc |
37281164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 12676015 - 12675971
Alignment:
| Q |
146 |
attgtggccgcaatataaaatattttgaagtctctgcaatggcat |
190 |
Q |
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| T |
12676015 |
attgtggccgcaatataaaagattttgaagtctctgcaatggcat |
12675971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 42421251 - 42421305
Alignment:
| Q |
117 |
atggttttaaattgcagtctgcaaccccaattgtggccgcaatataaaatatttt |
171 |
Q |
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| T |
42421251 |
atggttttaaattgcggtttgcaacaacaattgtggccgcaatataaagtatttt |
42421305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 13299495 - 13299562
Alignment:
| Q |
117 |
atggttttaaattgcagtctgcaaccccaattgtggccgcaatataaaatattttgaagtctctgcaa |
184 |
Q |
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| T |
13299495 |
atggttttaaattgcagtctgcaatcacaattgtgtctgttacataaagaattttgaagtctctgcaa |
13299562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 10978586 - 10978546
Alignment:
| Q |
153 |
ccgcaatataaaatattttgaagtctctgcaatggcattgc |
193 |
Q |
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| T |
10978586 |
ccgcaatataaaagattttgaggtctctgcaacggcattgc |
10978546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 50587506 - 50587446
Alignment:
| Q |
117 |
atggttttaaattgcagtctgcaaccccaattgtggccgcaatataaaatattttgaagtc |
177 |
Q |
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| T |
50587506 |
atggttttaaattgcgttctgcaaacgcaattgtgcccgcaatataaaggattttaaagtc |
50587446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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