View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_54 (Length: 245)
Name: NF21245_low_54
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10969145 - 10968906
Alignment:
| Q |
1 |
tggctgcatagatttcatcacaaactaaatggattgttttctcattgatgaaggttataagactctttagtgtctctttgtctaaggttgttcctaatgg |
100 |
Q |
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| T |
10969145 |
tggctgcatagatttcatcacaaactaaatggattgttttctcattgatgaaggttataagactctttagtgtctctttgtctaaggttgttcctaatgg |
10969046 |
T |
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| Q |
101 |
gttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgctttgttgtatgctacttcaagtgcttctcttgttattttgaagttg |
200 |
Q |
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| T |
10969045 |
gttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgcttttttgtatgctacttcaagtgcttctcttgttattttgaagttg |
10968946 |
T |
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| Q |
201 |
ttggagctatcacaatggacaggaattaattgaacctttg |
240 |
Q |
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| T |
10968945 |
ttggagctatcacaatggacaggaattaattgaacctttg |
10968906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 29964129 - 29964294
Alignment:
| Q |
63 |
ctctttagtgtctctttgtctaaggttgttcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgctttgttgt |
162 |
Q |
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||||||||||| ||||| ||||| ||||||||||| || || || || ||||||||||| |||||||||||||||||||| | |||||||||||| || | |
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| T |
29964129 |
ctctttagtgtatctttttctaatgttgttcctaaaggatttgatggatttgttatgattaacccttttacattgatgttttcttcttgtgcttttttat |
29964228 |
T |
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| Q |
163 |
atgctacttcaagtgcttctcttgttattttgaagttgttggagctatcacaatggacaggaatta |
228 |
Q |
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| T |
29964229 |
gagcttcttcaagtgcttctcttgttatcttgaaattgtttgagctatgacattggacaggaatta |
29964294 |
T |
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