View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_55 (Length: 238)
Name: NF21245_low_55
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35364382 - 35364603
Alignment:
| Q |
1 |
cagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattg |
100 |
Q |
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| T |
35364382 |
cagagaaatatctagaaaactaatagtacaatgcatgaatcaaaccatgggatccatggccagaacagtgctaagattcatagggtacatatactcattg |
35364481 |
T |
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| Q |
101 |
gagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttg |
200 |
Q |
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| T |
35364482 |
gagccattcaagatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttg |
35364581 |
T |
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| Q |
201 |
caagaggtgtgcataatttaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35364582 |
caagaggtgtgcataatttaat |
35364603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 35376147 - 35376360
Alignment:
| Q |
2 |
agagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattgg |
101 |
Q |
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|||||||| |||| |||||||| ||| ||||| ||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||| |
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| T |
35376147 |
agagaaatgtctaaaaaactaatagtgcaatgcatgaatcaaactatgggatccatggcgagaacagtgcttagattcatagggtacatatactcattgg |
35376246 |
T |
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| Q |
102 |
agccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgc |
201 |
Q |
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| T |
35376247 |
agccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcacaagtttga |
35376346 |
T |
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| Q |
202 |
aagaggtgtgcata |
215 |
Q |
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||| |||||||||| |
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| T |
35376347 |
aaggggtgtgcata |
35376360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 35357627 - 35357800
Alignment:
| Q |
37 |
gaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaa |
136 |
Q |
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|||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||| ||||| ||| | | || ||||||||||||||||||| | |
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| T |
35357627 |
gaatcaaaccatggaatccatggcgagaacagtgctaagattcatagggttcatatacaggttggatccaatgaacatctgttggactatgattctgcta |
35357726 |
T |
|
| Q |
137 |
gctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgt |
210 |
Q |
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| T |
35357727 |
gctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttgaaataggtgt |
35357800 |
T |
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