View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21245_low_56 (Length: 238)

Name: NF21245_low_56
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21245_low_56
NF21245_low_56
[»] chr4 (29 HSPs)
chr4 (17-91)||(26049037-26049111)
chr4 (17-91)||(26068104-26068178)
chr4 (17-91)||(26112021-26112095)
chr4 (148-208)||(18417699-18417759)
chr4 (148-208)||(23928636-23928696)
chr4 (148-213)||(27434647-27434712)
chr4 (148-208)||(42274561-42274622)
chr4 (148-208)||(530738-530798)
chr4 (148-208)||(1298954-1299014)
chr4 (148-219)||(4552816-4552887)
chr4 (17-91)||(26056442-26056525)
chr4 (152-219)||(32318793-32318860)
chr4 (17-63)||(26085679-26085725)
chr4 (17-63)||(26128972-26129018)
chr4 (148-208)||(13204419-13204479)
chr4 (148-208)||(20435209-20435269)
chr4 (148-219)||(55107555-55107626)
chr4 (150-208)||(35360718-35360776)
chr4 (148-208)||(4688316-4688377)
chr4 (148-213)||(4895009-4895074)
chr4 (148-208)||(24915863-24915928)
chr4 (148-219)||(24969610-24969684)
chr4 (148-208)||(28809916-28809976)
chr4 (148-208)||(52824281-52824341)
chr4 (143-189)||(3017169-3017215)
chr4 (148-208)||(52587384-52587442)
chr4 (143-179)||(14171466-14171502)
chr4 (148-208)||(21048774-21048833)
chr4 (148-208)||(56552103-56552163)
[»] chr8 (19 HSPs)
chr8 (148-208)||(10778699-10778759)
chr8 (148-208)||(8210365-8210425)
chr8 (148-208)||(29781028-29781088)
chr8 (148-208)||(38520060-38520120)
chr8 (148-208)||(40891055-40891115)
chr8 (128-187)||(2316155-2316214)
chr8 (148-208)||(17426697-17426759)
chr8 (148-208)||(33390690-33390748)
chr8 (143-179)||(29869937-29869973)
chr8 (148-208)||(33100714-33100774)
chr8 (148-208)||(38629516-38629576)
chr8 (159-206)||(4035785-4035832)
chr8 (140-191)||(13886420-13886471)
chr8 (158-208)||(38405180-38405231)
chr8 (150-208)||(37114280-37114338)
chr8 (148-208)||(12234508-12234569)
chr8 (148-208)||(15882242-15882303)
chr8 (148-208)||(4262045-4262105)
chr8 (143-191)||(26676762-26676810)
[»] chr1 (41 HSPs)
chr1 (107-208)||(10262422-10262524)
chr1 (148-208)||(27240993-27241053)
chr1 (107-208)||(3607756-3607858)
chr1 (148-208)||(2854601-2854661)
chr1 (148-208)||(19954980-19955040)
chr1 (148-208)||(23698571-23698631)
chr1 (148-208)||(48954283-48954343)
chr1 (148-208)||(50627173-50627233)
chr1 (150-208)||(5189511-5189569)
chr1 (150-208)||(28244000-28244058)
chr1 (148-208)||(9978120-9978181)
chr1 (148-208)||(15324668-15324729)
chr1 (147-208)||(39015261-39015322)
chr1 (147-208)||(42561363-42561424)
chr1 (148-208)||(6079426-6079486)
chr1 (148-208)||(14387084-14387144)
chr1 (148-208)||(19797050-19797110)
chr1 (151-208)||(27926322-27926381)
chr1 (148-208)||(48645083-48645143)
chr1 (128-198)||(19089647-19089718)
chr1 (139-208)||(26208466-26208537)
chr1 (130-219)||(19202509-19202599)
chr1 (128-201)||(19204081-19204155)
chr1 (128-201)||(19206491-19206565)
chr1 (151-208)||(27928369-27928427)
chr1 (151-208)||(47940642-47940700)
chr1 (158-219)||(2125149-2125210)
chr1 (148-208)||(4299461-4299524)
chr1 (148-208)||(1387820-1387880)
chr1 (148-208)||(9895295-9895355)
chr1 (143-198)||(4044595-4044650)
chr1 (160-219)||(16755256-16755315)
chr1 (149-208)||(18651320-18651379)
chr1 (150-201)||(19214547-19214598)
chr1 (150-208)||(21930422-21930481)
chr1 (148-208)||(40647158-40647220)
chr1 (150-208)||(3767698-3767756)
chr1 (150-208)||(27670185-27670243)
chr1 (148-208)||(957630-957691)
chr1 (148-208)||(50162607-50162668)
chr1 (148-208)||(51276764-51276824)
[»] chr5 (17 HSPs)
chr5 (112-208)||(21261985-21262082)
chr5 (148-208)||(1138601-1138661)
chr5 (148-208)||(24397314-24397375)
chr5 (148-208)||(1456091-1456151)
chr5 (148-208)||(15855885-15855945)
chr5 (148-208)||(16472997-16473057)
chr5 (148-208)||(35420681-35420741)
chr5 (148-208)||(33629414-33629476)
chr5 (158-208)||(21259809-21259859)
chr5 (147-208)||(4266024-4266085)
chr5 (148-205)||(12744871-12744928)
chr5 (150-208)||(43539149-43539207)
chr5 (148-208)||(20476473-20476533)
chr5 (148-208)||(37655221-37655280)
chr5 (144-188)||(2538458-2538502)
chr5 (148-208)||(13754360-13754420)
chr5 (148-208)||(37552377-37552437)
[»] chr3 (41 HSPs)
chr3 (147-208)||(43639149-43639211)
chr3 (148-219)||(10117546-10117618)
chr3 (148-208)||(10441327-10441387)
chr3 (148-208)||(12838119-12838179)
chr3 (148-208)||(26906496-26906556)
chr3 (148-208)||(36278825-36278885)
chr3 (148-208)||(36329249-36329309)
chr3 (148-219)||(55340362-55340434)
chr3 (148-219)||(10017145-10017216)
chr3 (150-208)||(3970562-3970620)
chr3 (107-219)||(10254599-10254713)
chr3 (150-208)||(13078234-13078292)
chr3 (150-208)||(21969228-21969286)
chr3 (150-208)||(21991664-21991722)
chr3 (148-208)||(22101206-22101267)
chr3 (148-208)||(25446291-25446352)
chr3 (147-208)||(25488409-25488470)
chr3 (147-208)||(25561053-25561114)
chr3 (148-208)||(39850413-39850474)
chr3 (148-208)||(36657502-36657562)
chr3 (152-208)||(36822833-36822889)
chr3 (151-208)||(4072345-4072403)
chr3 (147-208)||(8831782-8831844)
chr3 (158-208)||(37506205-37506255)
chr3 (147-205)||(44611449-44611507)
chr3 (147-219)||(13724055-13724128)
chr3 (148-208)||(22176150-22176211)
chr3 (148-205)||(43150525-43150582)
chr3 (148-208)||(12789648-12789708)
chr3 (152-208)||(32237467-32237523)
chr3 (112-219)||(37536901-37537009)
chr3 (148-208)||(45487841-45487901)
chr3 (138-208)||(38125237-38125308)
chr3 (158-213)||(44920725-44920780)
chr3 (148-219)||(46664207-46664278)
chr3 (150-219)||(1476622-1476691)
chr3 (128-219)||(23801127-23801220)
chr3 (148-193)||(50099491-50099536)
chr3 (158-205)||(404089-404137)
chr3 (148-188)||(35368795-35368835)
chr3 (148-208)||(45712972-45713032)
[»] chr7 (24 HSPs)
chr7 (128-208)||(32482262-32482343)
chr7 (148-208)||(30259135-30259195)
chr7 (148-208)||(30594735-30594795)
chr7 (148-208)||(38883263-38883323)
chr7 (107-208)||(35339305-35339407)
chr7 (148-208)||(20184307-20184368)
chr7 (148-208)||(24836062-24836122)
chr7 (148-205)||(25742500-25742557)
chr7 (151-219)||(39617913-39617982)
chr7 (148-208)||(3953111-3953171)
chr7 (148-208)||(10936539-10936599)
chr7 (148-208)||(34052321-34052381)
chr7 (148-208)||(45997577-45997637)
chr7 (148-208)||(24123824-24123886)
chr7 (158-208)||(37093810-37093860)
chr7 (148-208)||(12142234-12142295)
chr7 (148-208)||(48103410-48103470)
chr7 (148-208)||(31231683-31231745)
chr7 (159-205)||(35665696-35665742)
chr7 (147-187)||(25572875-25572915)
chr7 (143-179)||(33355234-33355270)
chr7 (143-191)||(33422393-33422441)
chr7 (151-208)||(38528482-38528541)
chr7 (148-208)||(40358157-40358217)
[»] scaffold0188 (1 HSPs)
scaffold0188 (148-208)||(7128-7188)
[»] scaffold0122 (1 HSPs)
scaffold0122 (148-208)||(45876-45936)
[»] chr6 (15 HSPs)
chr6 (148-208)||(885427-885487)
chr6 (148-208)||(15546674-15546734)
chr6 (150-208)||(8091104-8091162)
chr6 (147-208)||(20501748-20501809)
chr6 (148-208)||(11687212-11687272)
chr6 (148-208)||(13172642-13172702)
chr6 (150-208)||(29609043-29609101)
chr6 (148-205)||(7808654-7808711)
chr6 (155-208)||(12831760-12831813)
chr6 (148-208)||(13439737-13439798)
chr6 (148-208)||(3369027-3369087)
chr6 (148-208)||(14393603-14393666)
chr6 (148-208)||(21380010-21380070)
chr6 (112-219)||(31764357-31764465)
chr6 (148-193)||(4238911-4238956)
[»] chr2 (24 HSPs)
chr2 (148-208)||(3116918-3116978)
chr2 (148-208)||(9281416-9281476)
chr2 (148-208)||(12850611-12850671)
chr2 (148-208)||(24101901-24101961)
chr2 (148-208)||(45408667-45408727)
chr2 (127-212)||(11085722-11085806)
chr2 (148-208)||(20892926-20892987)
chr2 (148-205)||(22269767-22269824)
chr2 (148-208)||(23835918-23835979)
chr2 (148-197)||(36951669-36951718)
chr2 (148-208)||(2818708-2818768)
chr2 (152-208)||(34490498-34490554)
chr2 (151-208)||(1924052-1924110)
chr2 (148-208)||(7737106-7737167)
chr2 (148-208)||(42713846-42713907)
chr2 (148-208)||(6605777-6605837)
chr2 (148-208)||(9933638-9933698)
chr2 (148-208)||(16705775-16705835)
chr2 (148-208)||(34455927-34455987)
chr2 (148-207)||(27920615-27920674)
chr2 (140-191)||(40503670-40503721)
chr2 (158-208)||(17434759-17434810)
chr2 (148-208)||(29229432-29229493)
chr2 (148-208)||(29342732-29342793)
[»] scaffold0107 (1 HSPs)
scaffold0107 (158-208)||(51105-51155)
[»] scaffold0137 (1 HSPs)
scaffold0137 (152-208)||(10158-10213)
[»] scaffold0086 (1 HSPs)
scaffold0086 (148-205)||(48171-48228)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 26049037 - 26049111
Alignment:
Q  17 aattaagaaatggagaattgggtggtcagtttgagcacatatattcacttcgaaactgaatttgattgaactact 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26049037 aattaagaaatggagaattgggtggtcagtttgagcacatatattcacttcgaaactgaatttgattgaattact 26049111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 26068104 - 26068178
Alignment:
Q  17 aattaagaaatggagaattgggtggtcagtttgagcacatatattcacttcgaaactgaatttgattgaactact 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26068104 aattaagaaatggagaattgggtggtcagtttgagcacatatattcacttcgaaactgaatttgattgaattact 26068178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 26112021 - 26112095
Alignment:
Q  17 aattaagaaatggagaattgggtggtcagtttgagcacatatattcacttcgaaactgaatttgattgaactact 91  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26112021 aattaagaaatgaagaattgggtggtcagtttgagcacagatattcactttgaaactgaatttgattgaactact 26112095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 18417759 - 18417699
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  18417759 tcaaatccataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 18417699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 23928636 - 23928696
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  23928636 tcaaatccataattttctcaaaatttgttatatccaaaaaaaatatatttttagttaagaa 23928696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 27434712 - 27434647
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatata 213  Q
    |||||| || |||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||    
T  27434712 tcaaattcataattttctcaaagtttgttatatccaaaaaaaatgtatttttagttaagaactata 27434647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 42274561 - 42274622
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  42274561 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatatatttttagttaagaa 42274622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 530738 - 530798
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  530738 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 530798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 1299014 - 1298954
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  1299014 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 1298954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 4552887 - 4552816
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||| ||  |||||||||    
T  4552887 tcaaatccataattttctcaaagtttgttatatccaaaaaatatttatttttagttaaaaaccatatgaaaa 4552816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 26056442 - 26056525
Alignment:
Q  17 aattaagaaatggagaattgggtggtcagtttgagcacatatattc---------acttcgaaactgaatttgattgaactact 91  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||         |||| ||||||||||||||||||||||||    
T  26056442 aattaagaaatggagaattgggttgtcagtttgagcacagatattcagtacttcgactttgaaactgaatttgattgaactact 26056525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 32318793 - 32318860
Alignment:
Q  152 atccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    ||||| |||||||||||||||||||||| ||| |||| ||||||||||| |||||||  |||||||||    
T  32318793 atccataattttctcaaagtttgttatatccaaaaaatatatatttttaattaagaatcatatgaaaa 32318860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 26085679 - 26085725
Alignment:
Q  17 aattaagaaatggagaattgggtggtcagtttgagcacatatattca 63  Q
    |||||||||||||||||||||||||||||||||||| || |||||||    
T  26085679 aattaagaaatggagaattgggtggtcagtttgagcgcagatattca 26085725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 26128972 - 26129018
Alignment:
Q  17 aattaagaaatggagaattgggtggtcagtttgagcacatatattca 63  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  26128972 aattaagaaatgaagaattgggtggtcagtttgagcacatgtattca 26129018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 13204479 - 13204419
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| ||||||| |||||||||||||| ||| |||| || ||||||||||||||||    
T  13204479 tcaaatccataattttcacaaagtttgttatatccaaaaaatatgtatttttagttaagaa 13204419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 20435209 - 20435269
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| ||||||||| |||||||||||| ||| |||| || ||||||||||||||||    
T  20435209 tcaaatccataattttctcgaagtttgttatatccaaaaaatatgtatttttagttaagaa 20435269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 55107626 - 55107555
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    |||||| || |||||||||||||||||||||| ||| | || || ||||||||||||||||  |||||||||    
T  55107626 tcaaatgcataattttctcaaagtttgttatatccaaataatatgtatttttagttaagaaccatatgaaaa 55107555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 35360776 - 35360718
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  35360776 aaatccataattttctcaaagtttgttatatctaaaaaatatgtatttttagttaagaa 35360718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 4688316 - 4688377
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||| ||||||||||||||||||||||||| ||| ||||| || |||||||| |||||||    
T  4688316 tcaaattcacaattttctcaaagtttgttatatccaaaaaaatatgtatttttaattaagaa 4688377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 4895074 - 4895009
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatata 213  Q
    |||||| || ||||||||||||||||||||||  || |||| || |||||||||||||||| ||||    
T  4895074 tcaaattcataattttctcaaagtttgttatattcaaaaaatatgtatttttagttaagaactata 4895009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 24915863 - 24915928
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaata-----tatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||     ||||||||||||||||    
T  24915863 tcaaatccataattttctcaaagtttgttatatccaaaaaaaataatatgtatttttagttaagaa 24915928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 24969610 - 24969684
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagcc---acaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    |||||| || |||||||||||||||||||||| ||   | ||||||| |||||||||||||||| |||| |||||    
T  24969610 tcaaattcataattttctcaaagtttgttatatccaaaaaaaaaaatgtatttttagttaagaactatacgaaaa 24969684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 28809916 - 28809976
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||| ||||||||| ||| |||| || ||||| ||||||||||    
T  28809916 tcaaatccataattttctcaaaatttgttatatccaaaaaatatgtatttctagttaagaa 28809976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 52824341 - 52824281
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||| ||||| | | |||| || ||||||||||||||||    
T  52824341 tcaaatccataattttctcaaagtttattatatctaaaaaatatgtatttttagttaagaa 52824281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 3017215 - 3017169
Alignment:
Q  143 atttttcaaatccacaattttctcaaagtttgttatagccacaaaaa 189  Q
    |||| |||||||||||||||||| ||||||||||| | |||||||||    
T  3017215 atttctcaaatccacaattttcttaaagtttgttacaaccacaaaaa 3017169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 52587384 - 52587442
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| |   ||||| ||||| ||||||||||||    
T  52587384 tcaaatccataattttctcaaagtttgttatatc--aaaaaattatatatttagttaagaa 52587442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 14171502 - 14171466
Alignment:
Q  143 atttttcaaatccacaattttctcaaagtttgttata 179  Q
    |||||||||||| |||| |||||||||||||||||||    
T  14171502 atttttcaaatctacaaatttctcaaagtttgttata 14171466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 21048774 - 21048833
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| ||||||||| ||||||||||||  || |||| || ||||||||||||||||    
T  21048774 tcaaatccataattttctcgaagtttgttata-tcaaaaaatatgtatttttagttaagaa 21048833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 56552163 - 56552103
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| |||   ||| | ||||||||||| ||||    
T  56552163 tcaaatccataattttctcaaagtttgttataaccaaggaaagtgtatttttagttgagaa 56552103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 10778759 - 10778699
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  10778759 tcaaattcacaatcttctcaaagtttgttatagccacaaaaaatgtatttttagttaagaa 10778699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 8210425 - 8210365
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| |||||| ||||||||||||    
T  8210425 tcaaatccataattttctcaaagtttgttatatccaaaaaatatatatatttagttaagaa 8210365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 29781028 - 29781088
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  29781028 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 29781088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 38520120 - 38520060
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  38520120 tcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 38520060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 40891115 - 40891055
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  40891115 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 40891055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 2316155 - 2316214
Alignment:
Q  128 actaaactactcataatttttcaaatccacaattttctcaaagtttgttatagccacaaa 187  Q
    |||||||||||||  |||||| |||||||||| ||||| |||||||||||||||||||||    
T  2316155 actaaactactcacgattttttaaatccacaactttcttaaagtttgttatagccacaaa 2316214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 17426697 - 17426759
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatat--atttttagttaagaa 208  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||||  |||||||||||||||    
T  17426697 tcaaatctataattttctcaaagtttgttatatccaaaaaaaatatacatttttagttaagaa 17426759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 33390748 - 33390690
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| |||||||||||||||||| |||||| ||||  ||||| ||||||||||||||||    
T  33390748 tcaaattcacaattttctcaaagttcgttataaccac--aaaatgtatttttagttaagaa 33390690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 29869937 - 29869973
Alignment:
Q  143 atttttcaaatccacaattttctcaaagtttgttata 179  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29869937 atttctcaaatccacaattttctcaaagtttgttata 29869973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 33100714 - 33100774
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | |||| || | ||||||||||||||    
T  33100714 tcaaatccataattttctcaaagtttgttatatcaaaaaaatatgtttttttagttaagaa 33100774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 38629576 - 38629516
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||| ||||| ||| |||| || ||||||||||||||||    
T  38629576 tcaaattcataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaa 38629516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 4035832 - 4035785
Alignment:
Q  159 attttctcaaagtttgttatagccacaaaaaatatatttttagttaag 206  Q
    ||||||||||| ||||||||| ||| |||| |||||||||||||||||    
T  4035832 attttctcaaaatttgttatatccaaaaaatatatatttttagttaag 4035785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 13886471 - 13886420
Alignment:
Q  140 ataatttttcaaatccacaattttctcaaagtttgttatagccacaaaaaat 191  Q
    ||||||| ||| |||||||||||| | ||||||||||||| |||||||||||    
T  13886471 ataatttctcatatccacaatttttttaaagtttgttataaccacaaaaaat 13886420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 38405231 - 38405180
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  38405231 aattttctcaaagtttgttatatccaaaaaaagatgtatttttagttaagaa 38405180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 37114338 - 37114280
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||| ||||| ||| |||| || |||||||| |||||||    
T  37114338 aaatccataattttctcaaagtttattatatccaaaaaatatgtatttttaattaagaa 37114280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 12234569 - 12234508
Alignment:
Q  148 tcaaatccacaattttctcaaagttt-gttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||| |||||| ||| |||| || ||||||||||||||||    
T  12234569 tcaaattcataattttctcaaagttttgttatatccaaaaaatatgtatttttagttaagaa 12234508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 15882303 - 15882242
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| ||| ||||||||||| |||||| ||| ||||| || ||||||||||||||||    
T  15882303 tcaaatccataatattctcaaagttagttatatccaaaaaaatatgtatttttagttaagaa 15882242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 4262045 - 4262105
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||| |||| ||||||||||||||||||||||  || |||| || |||||||| |||||||    
T  4262045 tcaagtccataattttctcaaagtttgttatattcaaaaaatatgtatttttaattaagaa 4262105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 26676810 - 26676762
Alignment:
Q  143 atttttcaaatccacaattttctcaaagtttgttatagccacaaaaaat 191  Q
    |||| ||||||||| |||||| ||||||||||||||| || ||||||||    
T  26676810 atttatcaaatccataattttgtcaaagtttgttataacctcaaaaaat 26676762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 10262524 - 10262422
Alignment:
Q  107 gtgcgttttgtatggttctcgactaaactactcataattttt-caaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    |||| ||||||||| ||||  ||| |||||||||| |||||| ||||||||||||||| ||| |||||| ||||  ||||||||||||| ||||||||||    
T  10262524 gtgcattttgtatgattcttaactcaactactcatgattttttcaaatccacaattttttcagagtttgctatattcacaaaaaatatagttttagttaa 10262425  T
Q  206 gaa 208  Q
    |||    
T  10262424 gaa 10262422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 27240993 - 27241053
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  27240993 tcaaatccataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 27241053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 3607756 - 3607858
Alignment:
Q  107 gtgcgttttgtatggttctcgactaaactactcataatttt-tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    |||| ||||||||||||||  |||||| |  |||| ||||  ||||||||| |||||||||||||||||||||| ||| |||| || |||||||||||||    
T  3607756 gtgctttttgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaa 3607855  T
Q  206 gaa 208  Q
    |||    
T  3607856 gaa 3607858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 2854601 - 2854661
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  2854601 tcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 2854661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 19954980 - 19955040
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  19954980 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 19955040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 23698571 - 23698631
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  23698571 tcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 23698631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 48954283 - 48954343
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  48954283 tcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 48954343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 50627233 - 50627173
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  50627233 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 50627173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 5189569 - 5189511
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  5189569 aaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 5189511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 28244058 - 28244000
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  28244058 aaatccataattttctcaaagtttgttatatccaaaaaagatgtatttttagttaagaa 28244000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 9978120 - 9978181
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  9978120 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 9978181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 15324729 - 15324668
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  15324729 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 15324668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 39015261 - 39015322
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||| ||||||||||||||| |||||| ||||||||| | |||||| |||||||||    
T  39015261 ttcaaatccataattttctcaaagttcgttataaccacaaaaagtgtattttaagttaagaa 39015322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 42561363 - 42561424
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  42561363 ttcatatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 42561424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 6079486 - 6079426
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || |||||||||| |||||    
T  6079486 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagtgaagaa 6079426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 14387084 - 14387144
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||| ||||| ||| |||| || ||||||||||||||||    
T  14387084 tcaaatccataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaa 14387144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 19797050 - 19797110
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| || ||||||||||||||||    
T  19797050 tcaaatccataattttttcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 19797110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 27926322 - 27926381
Alignment:
Q  151 aatccacaattttctcaaagtttgttatagccacaaaaaata--tatttttagttaagaa 208  Q
    |||||| |||||||||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  27926322 aatccataattttctcaaagtttgttatatccaaaaaaaatatgtatttttagttaagaa 27926381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 48645083 - 48645143
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  48645083 tcaaatccataattttctcaaagtttgttatatctaaaaaatatgtatttttagttaagaa 48645143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 19089647 - 19089718
Alignment:
Q  128 actaaactactcataatttttc-aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttt 198  Q
    |||||||||||||| |||||   ||||||||||| |||||||||||| |||||| |||||||||| ||||||    
T  19089647 actaaactactcatgattttcataaatccacaatattctcaaagtttattatagtcacaaaaaatgtatttt 19089718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 26208537 - 26208466
Alignment:
Q  139 cataattt-ttcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||| ||||    
T  26208537 cataatttcttcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttgagaa 26208466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 19202509 - 19202599
Alignment:
Q  130 taaactactcataatttttc-aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    |||||||||||| |||||   ||||||||||| |||||||||||| |||||| |||||||| | ||||||||| | ||||  |||||||||    
T  19202509 taaactactcatgattttcagaaatccacaatattctcaaagtttattatagtcacaaaaagtgtatttttaggtgagaatcatatgaaaa 19202599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 19204081 - 19204155
Alignment:
Q  128 actaaactactcataatttttc-aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttag 201  Q
    |||||||||||||| |||||   |||| ||||||||||||||||||| |||||| |||||||| | |||||||||    
T  19204081 actaaactactcatgattttcataaattcacaattttctcaaagtttattatagtcacaaaaagtgtatttttag 19204155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 19206491 - 19206565
Alignment:
Q  128 actaaactactcataatttttc-aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttag 201  Q
    |||||||||||||| |||||   |||| ||||||||||||||||||| |||||| |||||||| | |||||||||    
T  19206491 actaaactactcatgattttcataaattcacaattttctcaaagtttattatagtcacaaaaagtgtatttttag 19206565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 27928369 - 27928427
Alignment:
Q  151 aatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  27928369 aatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 27928427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 47940642 - 47940700
Alignment:
Q  151 aatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  47940642 aatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 47940700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 2125149 - 2125210
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    |||||||||||||||||||||| | | |||| || |||||||||||||||| |||| |||||    
T  2125149 aattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaactatacgaaaa 2125210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 4299461 - 4299524
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa---atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||||   || ||||||||||||||||    
T  4299461 tcaaatccataattttctcaaagtttgttatatccaaaaaaaaatatgtatttttagttaagaa 4299524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 1387880 - 1387820
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||| ||||| ||| |||| || ||||||||||||||||    
T  1387880 tcaaattcataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaa 1387820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 9895355 - 9895295
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  9895355 tcaaatacataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaa 9895295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 4044650 - 4044595
Alignment:
Q  143 atttttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttt 198  Q
    |||| |||||||||||||||||| ||||||| || || |||||||||||| |||||    
T  4044650 atttctcaaatccacaattttcttaaagtttattgtaaccacaaaaaataaatttt 4044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 16755315 - 16755256
Alignment:
Q  160 ttttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    |||| ||||||||||||||| ||| || | || |||||||||||||||| ||||||||||    
T  16755315 ttttttcaaagtttgttatatccaaaacatatgtatttttagttaagaactatatgaaaa 16755256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 18651320 - 18651379
Alignment:
Q  149 caaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||| |||||||||||| ||||||||| | | ||||||| |||||||| |||||||    
T  18651320 caaatccataattttctcaaaatttgttataactaaaaaaaatgtatttttatttaagaa 18651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 19214547 - 19214598
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttag 201  Q
    |||| ||||||||||||||||||| |||||| |||||||| | |||||||||    
T  19214547 aaattcacaattttctcaaagtttattatagtcacaaaaagtgtatttttag 19214598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 21930481 - 21930422
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||| |||||||| ||||||||||||| ||| ||||| || ||||||||||||||||    
T  21930481 aaatccataattttcttaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 21930422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 40647220 - 40647158
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaata--tatttttagttaagaa 208  Q
    ||||||||| ||||||||||||||||||||||   | ||||||||  ||||||||||||||||    
T  40647220 tcaaatccataattttctcaaagtttgttatataaaaaaaaaatatgtatttttagttaagaa 40647158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 3767756 - 3767698
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||||||||| ||||||||| | | ||||||| ||| |||||||||| |||||    
T  3767756 aaatccacaattttcttaaagtttgtcaaaaccacaaataatgtatttttagtcaagaa 3767698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 27670243 - 27670185
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||| |||||  || |||| || ||||||||||||||||    
T  27670243 aaatccataattttctcaaagttttttatattcaaaaaatatgtatttttagttaagaa 27670185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 957691 - 957630
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | ||||| || || |||||||||||||    
T  957691 tcaaatccataattttctcaaagtttgttatatcaaaaaaaatatgtaattttagttaagaa 957630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 50162607 - 50162668
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||| | |||||||||||||||||||||| ||| ||||| || || |||||||||||||    
T  50162607 tcaaatctataattttctcaaagtttgttatatccaaaaaaatatgtaattttagttaagaa 50162668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 51276764 - 51276824
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||| |||||   | ||||||| ||||||||| ||||||    
T  51276764 tcaaatccataattttctcaaagtttattatataaaaaaaaaatgtatttttagctaagaa 51276824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 21262082 - 21261985
Alignment:
Q  112 ttttgtatggttctcgactaaactactcataatttt-tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||||||||  |||||| |  |||| ||||  |||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  21262082 ttttgtatggttcttaactaaattcatcatgatttcctcaaatccacaattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 21261985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 1138661 - 1138601
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  1138661 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 1138601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 24397314 - 24397375
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  24397314 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 24397375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 1456091 - 1456151
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || |||||||||| |||||    
T  1456091 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagtcaagaa 1456151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 15855945 - 15855885
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  15855945 tcaaatccataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaa 15855885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 16473057 - 16472997
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  16473057 tcaaatccataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaa 16472997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 35420681 - 35420741
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  35420681 tcaaatccataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaa 35420741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 33629414 - 33629476
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaa--aaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||  | |||||||||||||||||||    
T  33629414 tcaaatccataattttctcaaagtttgttatatccaaaaaatatatatatttttagttaagaa 33629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 21259809 - 21259859
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  21259809 aattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 21259859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 4266085 - 4266024
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||| |||||||| ||||||||||| | ||| |||| || ||||||||||||||||    
T  4266085 ttcaaatccataattttcttaaagtttgttacatccaaaaaatatgtatttttagttaagaa 4266024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 12744928 - 12744871
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    |||||| || |||||||||||||||||||||| ||| |||| || |||||||||||||    
T  12744928 tcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaa 12744871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 43539207 - 43539149
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||| ||||| ||||    
T  43539207 aaatccataattttctcaaagtttgttatatccaaaaaatatgtatttatagttcagaa 43539149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 20476533 - 20476473
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||| ||||||||| | ||||||| || ||||||||||||||||    
T  20476533 tcaaatccataattttctcaaaatttgttatatc-acaaaaatatgtatttttagttaagaa 20476473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 37655221 - 37655280
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaata--tatttttagttaagaa 208  Q
    |||||| || ||||||||||||||||||||||   ||||||||||  ||||||||||||||||    
T  37655221 tcaaattcataattttctcaaagtttgttata---acaaaaaatatgtatttttagttaagaa 37655280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 2538502 - 2538458
Alignment:
Q  144 tttttcaaatccacaattttctcaaagtttgttatagccacaaaa 188  Q
    ||||||||||||| |||||||||| ||||||||||| ||| ||||    
T  2538502 tttttcaaatccataattttctcagagtttgttataaccagaaaa 2538458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 13754360 - 13754420
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || ||||||||||||||||| |||| | | |||| || ||||||||||||||||    
T  13754360 tcaaattcataattttctcaaagtttgctatatcaaaaaaatatgtatttttagttaagaa 13754420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 37552377 - 37552437
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| | | |||| || |||||||||| |||||    
T  37552377 tcaaattcataattttctcaaagtttgttataacaaaaaaatatgtatttttagtcaagaa 37552437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 43639149 - 43639211
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  43639149 ttcaaatccataattttctcaaagtttgttatatccaaaaaaatatatatttttagttaagaa 43639211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 10117618 - 10117546
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaaatatatgaaaa 219  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||  |||||||||    
T  10117618 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatatgaaaa 10117546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 10441327 - 10441387
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  10441327 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 10441387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 12838179 - 12838119
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  12838179 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 12838119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 26906556 - 26906496
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  26906556 tcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 26906496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 36278825 - 36278885
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  36278825 tcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 36278885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 36329249 - 36329309
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  36329249 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 36329309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 55340362 - 55340434
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaaatatatgaaaa 219  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||  |||||||||    
T  55340362 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatatgaaaa 55340434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 10017216 - 10017145
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| || ||||||||||||||||  |||||||||    
T  10017216 tcaaatccataattttttcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatatgaaaa 10017145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 3970562 - 3970620
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  3970562 aaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 3970620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 10254713 - 10254599
Alignment:
Q  107 gtgcgttttgtatggttctcgactaaactactcataatttt-tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagtta 204  Q
    |||| ||| ||||||||||  |||||| |  |||| ||||| ||||||||| |||||| ||||||||||||||| ||| ||||| || ||||||||||||    
T  10254713 gtgcttttcgtatggttcttaactaaattcatcatgattttctcaaatccataattttttcaaagtttgttatatccaaaaaaatatgtatttttagtta 10254614  T
Q  205 agaaatatatgaaaa 219  Q
    ||||  |||||||||    
T  10254613 agaaccatatgaaaa 10254599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 13078234 - 13078292
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  13078234 aaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 13078292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 21969228 - 21969286
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  21969228 aaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 21969286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 21991664 - 21991722
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  21991664 aaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 21991722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 22101267 - 22101206
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagcc-acaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| || |||||| || ||||||||||||||||    
T  22101267 tcaaatccataattttctcaaagtttgttatatccaacaaaatatgtatttttagttaagaa 22101206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 25446352 - 25446291
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  25446352 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 25446291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 25488409 - 25488470
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  25488409 ttcatatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 25488470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 25561114 - 25561053
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  25561114 ttcatatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 25561053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 39850413 - 39850474
Alignment:
Q  148 tcaaatccacaattttctca-aagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||| |||||||||||| ||| |||| |||||||||||||||||||    
T  39850413 tcaaatccataattttctcacaagtttgttatatccaaaaaatatatatttttagttaagaa 39850474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 36657502 - 36657562
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  36657502 tcaaatccataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaa 36657562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 36822833 - 36822889
Alignment:
Q  152 atccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  36822833 atccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 36822889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 4072345 - 4072403
Alignment:
Q  151 aatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  4072345 aatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 4072403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 8831844 - 8831782
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||| ||||    
T  8831844 ttcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagtttagaa 8831782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 37506205 - 37506255
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  37506205 aattttctcaaagtttgttatctccaaaaaaaatgtatttttagttaagaa 37506255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 44611449 - 44611507
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    ||||||| || |||||||||||||||||||||| | | |||| ||||||||||||||||    
T  44611449 ttcaaattcataattttctcaaagtttgttatatcaaaaaaatatatatttttagttaa 44611507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 13724055 - 13724128
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaaatatatgaaaa 219  Q
    ||||||| || |||||||||||||||||||||| ||| ||||| || ||||||||||||| || |||| |||||    
T  13724055 ttcaaattcataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaaaaattatacgaaaa 13724128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 22176211 - 22176150
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagcc-acaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||| ||| || |||||| || ||||||||||||||||    
T  22176211 tcaaatccataattttctcaaagtttgtaatatccaacaaaatatgtatttttagttaagaa 22176150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 43150582 - 43150525
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    |||||| || |||||||||||||||||||||| ||| |||| || |||||||||||||    
T  43150582 tcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaa 43150525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 12789708 - 12789648
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||| ||||||||||||||| ||| |||| || ||||||||||||||||    
T  12789708 tcaaattcataattttttcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 12789648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 32237467 - 32237523
Alignment:
Q  152 atccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||| |||||||||||||||||||||| ||| |||| || |||||||| |||||||    
T  32237467 atccataattttctcaaagtttgttatatccaaaaaatatgtatttttaattaagaa 32237523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 37537009 - 37536901
Alignment:
Q  112 ttttgtatggttctcgactaaactactcataatttt-tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaat 210  Q
    ||||||||||||||  |||||| || | |||||||  || |||||| |||||||||||||||||||||| | | |||| || || |||||| ||||||      
T  37537009 ttttgtatggttcttaactaaattatttataatttcctctaatccataattttctcaaagtttgttataacaaaaaaatatgtaattttagataagaacc 37536910  T
Q  211 atatgaaaa 219  Q
    |||||||||    
T  37536909 atatgaaaa 37536901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 45487901 - 45487841
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || ||||||||||| |||||||||| ||| |||| || ||||||||||||||||    
T  45487901 tcaaattcataattttctcaatgtttgttatatccaaaaaatatgtatttttagttaagaa 45487841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 38125237 - 38125308
Alignment:
Q  138 tcataatttt-tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||| | ||||||| |||||||| |||||||||||||  || |||| || ||||||||||||||||    
T  38125237 tcataattttcttaaatccataattttcttaaagtttgttatatacaaaaaatatgtatttttagttaagaa 38125308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 44920725 - 44920780
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatata 213  Q
    |||||||||||||||| ||||| ||| |||| || |||||||||||||||| ||||    
T  44920725 aattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaactata 44920780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 46664278 - 46664207
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    |||||| || ||||||||||||||||||||||   | |||| || |||||||||||||||| |||| |||||    
T  46664278 tcaaattcataattttctcaaagtttgttatattaaaaaaatatgtatttttagttaagaactatacgaaaa 46664207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 1476622 - 1476691
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatatatgaaaa 219  Q
    ||||||| |||| ||||||||||||||||  | | ||||| | ||||||||||||||||  |||||||||    
T  1476622 aaatccataattctctcaaagtttgttatctctaaaaaaattgtatttttagttaagaaccatatgaaaa 1476691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 23801220 - 23801127
Alignment:
Q  128 actaaactactcataattt-ttcaaatccacaattttctcaaagtttgttatagccacaaaaaata-tatttttagttaagaaatatatgaaaa 219  Q
    ||||||||||| || |||| |||||||  |||||||||| ||| ||||||||| ||  |||||||  |||||||||||||||| |||| |||||    
T  23801220 actaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaaa 23801127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 50099536 - 50099491
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatat 193  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||    
T  50099536 tcaaattcataattttctcaaagtttgttatatccaaaaaaaatat 50099491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 404137 - 404089
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaa-atatatttttagttaa 205  Q
    |||||||||||||||||||||| ||| ||||| || |||||||||||||    
T  404137 aattttctcaaagtttgttatatccaaaaaaatatttatttttagttaa 404089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 35368835 - 35368795
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaa 188  Q
    ||||||||| |||||||||||||||||||||| ||| ||||    
T  35368835 tcaaatccataattttctcaaagtttgttatatccaaaaaa 35368795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 45712972 - 45713032
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||| ||| |||||| ||||||||||||||| ||| |||| || ||||||||||| ||||    
T  45712972 tcaaagccataattttatcaaagtttgttatatccaaaaaatatgtatttttagtttagaa 45713032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 32482262 - 32482343
Alignment:
Q  128 actaaactactcataatttt-tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| ||||||| ||||| |||||||||||||||| | |||| |||||||| | ||||||||| ||||||||||||||||    
T  32482262 actaaattactcatgattttctcaaatccacaatttttttaaaggttgttataacaacaaaaaatgtatttttagttaagaa 32482343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 30259135 - 30259195
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  30259135 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 30259195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 30594795 - 30594735
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  30594795 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 30594735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 38883323 - 38883263
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  38883323 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 38883263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 35339305 - 35339407
Alignment:
Q  107 gtgcgttttgtatggttctcgactaaactactcataattt-ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    |||| ||| ||||||||||  |||||| |  |||| |||| |||||||||| |||||||||||||||||||||| ||| |||| || |||||||| ||||    
T  35339305 gtgcttttcgtatggttcttaactaaattcatcatgatttcttcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttatttaa 35339404  T
Q  206 gaa 208  Q
    |||    
T  35339405 gaa 35339407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 20184307 - 20184368
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  20184307 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 20184368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 24836122 - 24836062
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||| ||||    
T  24836122 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttnagaa 24836062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 25742500 - 25742557
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || |||||||||||||    
T  25742500 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaa 25742557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 39617913 - 39617982
Alignment:
Q  151 aatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaaatatatgaaaa 219  Q
    |||||| |||||||||||||||||||||| ||| ||||| || |||||||||||||||| |||| |||||    
T  39617913 aatccataattttctcaaagtttgttatatccaaaaaaatatttatttttagttaagaactatacgaaaa 39617982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 3953111 - 3953171
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| ||||||| |||||||||||||| ||| |||| || ||||||||||||||||    
T  3953111 tcaaatccataattttcacaaagtttgttatatccaaaaaatatgtatttttagttaagaa 3953171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 10936539 - 10936599
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| | |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  10936539 tcaaatctataattttctcaaagtttgttataaccaaaaaatatgtatttttagttaagaa 10936599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 34052381 - 34052321
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  34052381 tcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 34052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 45997577 - 45997637
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||| ||||| ||| |||| || ||||||||||||||||    
T  45997577 tcaaatccataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaa 45997637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 24123824 - 24123886
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaata--tatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||  |||||||| |||||||    
T  24123824 tcaaatccataattttctcaaagtttgttatatccaaaaaaaatatgtatttttaattaagaa 24123886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 37093860 - 37093810
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||||||||||||||| ||| |||| ||||||||||| |||||||    
T  37093860 aattttctcaaagtttgttatatccaaaaaatatatatttttaattaagaa 37093810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 12142295 - 12142234
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaa-aaatatatttttagttaagaa 208  Q
    ||||||||| ||||||||||||| |||||||| ||| ||| | |||||||||||||||||||    
T  12142295 tcaaatccataattttctcaaagattgttatatccaaaaatatatatatttttagttaagaa 12142234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 48103470 - 48103410
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||  ||||||||||||||||| ||| |||| || ||||||||||||||||    
T  48103470 tcaaatccataataatctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 48103410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 31231683 - 31231745
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttata--gccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| ||||||||||||||||||||||   ||| |||| || ||||||||||||||||    
T  31231683 tcaaatccataattttctcaaagtttgttatatgtccaaaaaatatgtatttttagttaagaa 31231745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 35665696 - 35665742
Alignment:
Q  159 attttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    ||||||||||||||||||||| ||| |||| || |||||||||||||    
T  35665696 attttctcaaagtttgttatatccaaaaaatatgtatttttagttaa 35665742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 25572915 - 25572875
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaa 187  Q
    |||||| ||| |||||||||||||||||||||| |||||||    
T  25572915 ttcaaaaccataattttctcaaagtttgttataaccacaaa 25572875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 33355270 - 33355234
Alignment:
Q  143 atttttcaaatccacaattttctcaaagtttgttata 179  Q
    |||| |||||||||||| |||||||||||||||||||    
T  33355270 atttctcaaatccacaaatttctcaaagtttgttata 33355234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 33422393 - 33422441
Alignment:
Q  143 atttttcaaatccacaattttctcaaagtttgttatagccacaaaaaat 191  Q
    ||||||| ||||||||||||| ||||  ||||||||| |||||||||||    
T  33422393 atttttccaatccacaattttttcaacatttgttataaccacaaaaaat 33422441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 38528482 - 38528541
Alignment:
Q  151 aatccacaattttctcaaagtttgttatagccacaaaaaata--tatttttagttaagaa 208  Q
    |||||| ||||||||||||||||||||||   | ||||||||  ||||||||||||||||    
T  38528482 aatccataattttctcaaagtttgttatataaaaaaaaaatatgtatttttagttaagaa 38528541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 40358217 - 40358157
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| | | |||| ||  |||||||||||||||    
T  40358217 tcaaattcataattttctcaaagtttgttatatcaaaaaaatatgcatttttagttaagaa 40358157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 7188 - 7128
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| || | |||||||||||||||||||    
T  7188 tcaaatccataattttctcaaagtttgttatatccaaaatatatatatttttagttaagaa 7128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 45936 - 45876
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  45936 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 45876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 885487 - 885427
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  885487 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 885427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 15546734 - 15546674
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  15546734 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 15546674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 8091162 - 8091104
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  8091162 aaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 8091104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 20501809 - 20501748
Alignment:
Q  147 ttcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||| ||||||||| |||||||||||| ||| |||| || ||||||||||||||||    
T  20501809 ttcaaatccataattttctcgaagtttgttatatccaaaaaatatgtatttttagttaagaa 20501748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 11687212 - 11687272
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| | | |||| || ||||||||||||||||    
T  11687212 tcaaatccataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaa 11687272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 13172642 - 13172702
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || |||||||| |||||||    
T  13172642 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttacttaagaa 13172702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 29609101 - 29609043
Alignment:
Q  150 aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| |||||||||||||||||||||  ||| |||| || ||||||||||||||||    
T  29609101 aaatccataattttctcaaagtttgttatctccaaaaaagatgtatttttagttaagaa 29609043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 7808711 - 7808654
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    ||||||| | |||||||||||||||||||||| ||| |||| || |||||||||||||    
T  7808711 tcaaatctataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaa 7808654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 12831760 - 12831813
Alignment:
Q  155 cacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||||||||||||||| ||| ||||||| || |||||||| |||||||    
T  12831760 cacaattttctcaaagtttgttctagtcacaaaatatgtatttttatttaagaa 12831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 13439798 - 13439737
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||| ||||||    
T  13439798 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagctaagaa 13439737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 3369087 - 3369027
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || ||||||||||||||||||||||  || |||| || ||||||||||||||||    
T  3369087 tcaaattcataattttctcaaagtttgttatattcaaaaaatatgtatttttagttaagaa 3369027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 14393666 - 14393603
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaa-aaata--tatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||| |||||  ||||||||||||||||    
T  14393666 tcaaatccataattttctcaaagtttgttatatccaaaaagaaatatgtatttttagttaagaa 14393603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 21380010 - 21380070
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || ||||||||||| |||||||||| ||| |||| || ||||||||||||||||    
T  21380010 tcaaattcataattttctcaatgtttgttatatccaaaaaatatgtatttttagttaagaa 21380070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 31764357 - 31764465
Alignment:
Q  112 ttttgtatggttctcgactaaactactcataatttt-tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaat 210  Q
    ||||||||||||||  |||||| |   ||| ||||| |||||| || ||||||||||||||||||| || ||| |||| || ||| |||||||||||| |    
T  31764357 ttttgtatggttcttaactaaattcaccattattttctcaaattcataattttctcaaagtttgttgtatccaaaaaatatgtatctttagttaagaact 31764456  T
Q  211 atatgaaaa 219  Q
    ||| |||||    
T  31764457 atacgaaaa 31764465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 4238956 - 4238911
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatat 193  Q
    ||||||||  |||||||||||||||||||||| ||| |||||||||    
T  4238956 tcaaatccttaattttctcaaagtttgttatatccaaaaaaaatat 4238911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 3116978 - 3116918
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  3116978 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 3116918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 9281416 - 9281476
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  9281416 tcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 9281476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 12850611 - 12850671
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  12850611 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 12850671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 24101901 - 24101961
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  24101901 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 24101961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 45408727 - 45408667
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  45408727 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 45408667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 11085722 - 11085806
Alignment:
Q  127 gactaaactactcataatttttc-aaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaaatat 212  Q
    |||| |||||||||| ||||||  ||||||||| ||||||||||||||||  ||| |||||||||| ||||||||| ||||||||||    
T  11085722 gactgaactactcatgatttttagaaatccacatttttctcaaagtttgt--taggcacaaaaaatgtatttttagctaagaaatat 11085806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 20892987 - 20892926
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  20892987 tcaaatccataattttctcaaagtttgttatatccataaaaatatgtatttttagttaagaa 20892926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 22269824 - 22269767
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || |||||||||||||    
T  22269824 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaa 22269767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 23835979 - 23835918
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  23835979 tcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 23835918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 36951669 - 36951718
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatattt 197  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  36951669 tcaaatccacaattttttcaaagtttgttataaccacaaaaaataaattt 36951718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 2818768 - 2818708
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| ||||||||||||||||| |||| ||| |||| || ||||||||||||||||    
T  2818768 tcaaatccataattttctcaaagtttgatatatccaaaaaatatgtatttttagttaagaa 2818708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 34490554 - 34490498
Alignment:
Q  152 atccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  34490554 atccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 34490498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 1924052 - 1924110
Alignment:
Q  151 aatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    |||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  1924052 aatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 1924110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 7737167 - 7737106
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||| ||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  7737167 tcaaagccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 7737106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 42713846 - 42713907
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaa-atatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||| ||||| ||| ||||| || ||||||||||||||||    
T  42713846 tcaaatccataattttctcaaagtttattatatccaaaaaaatatgtatttttagttaagaa 42713907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 6605837 - 6605777
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||| || |||||||||||||||||||||| ||| | || || ||||||||||||||||    
T  6605837 tcaaatgcataattttctcaaagtttgttatatccaaataatatgtatttttagttaagaa 6605777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 9933638 - 9933698
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||||||| ||||| | | |||| || ||||||||||||||||    
T  9933638 tcaaatccataattttctcaaagtttattatatctaaaaaatatgtatttttagttaagaa 9933698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 16705835 - 16705775
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||| ||| |||||| ||||||||||||||| ||| |||| || ||||||||||||||||    
T  16705835 tcaaagccataattttatcaaagtttgttatatccaaaaaatatgtatttttagttaagaa 16705775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 34455987 - 34455927
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||| | |||||||||||||||||||||| ||| |||| || |||||||| |||||||    
T  34455987 tcaaatctataattttctcaaagtttgttatatccaaaaaatatgtatttttaattaagaa 34455927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 27920674 - 27920615
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaaga 207  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| || || ||||||||||||    
T  27920674 tcaaatccataattttttcaaagtttgttatatccaaaaaatatgtagttttagttaaga 27920615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 40503670 - 40503721
Alignment:
Q  140 ataatttttcaaatccacaattttctcaaagtttgttatagccacaaaaaat 191  Q
    ||||||| ||||||||||| |||||||||| ||||||||| ||||| |||||    
T  40503670 ataatttctcaaatccacatttttctcaaattttgttataaccacacaaaat 40503721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 17434759 - 17434810
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaaatatatt--tttagttaagaa 208  Q
    |||||||||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  17434759 aattttctcaaagtttgttatatcca-aaaaaatatatttatttagttaagaa 17434810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 29229432 - 29229493
Alignment:
Q  148 tcaaatccacaattttctcaaa-gtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||| |||| ||||| ||| |||| || ||||||||||||||||    
T  29229432 tcaaatccataattttctcaaaagtttattatatccaaaaaatatgtatttttagttaagaa 29229493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 29342732 - 29342793
Alignment:
Q  148 tcaaatccacaattttctcaaa-gtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||||||| |||||||||||| |||| ||||| ||| |||| || ||||||||||||||||    
T  29342732 tcaaatccataattttctcaaaagtttattatatccaaaaaatatgtatttttagttaagaa 29342793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 51155 - 51105
Alignment:
Q  158 aattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  51155 aattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaa 51105  T

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Target: scaffold0137 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 10213 - 10158
Alignment:
Q  152 atccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaagaa 208  Q
    ||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  10213 atccataattttctcaaagtttgttatatcca-aaaatatatatttttagttaagaa 10158  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 48228 - 48171
Alignment:
Q  148 tcaaatccacaattttctcaaagtttgttatagccacaaaaaatatatttttagttaa 205  Q
    ||||||||| |||||||||||||||||||||| ||| |||| || |||||||| ||||    
T  48228 tcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttaattaa 48171  T

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