View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_low_6 (Length: 600)
Name: NF21245_low_6
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_6 |
 | |
|
| [»] scaffold0060 (2 HSPs) |
| | |
|
| [»] scaffold1769 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Original strand, 8442244 - 8442818
Alignment:
| Q |
18 |
atatctaccagttcaccaacacatcctaatattcctcctataagtagtcacagtgataatcgaaatgatacaattgtgactattttcacttctcaagatg |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
8442244 |
atatctaccagttcaccaatacatcctaatattcctcctataaatagtcacaatgataattgaaatgatacaattgtgactatttccacttctcaagaag |
8442343 |
T |
|
| Q |
118 |
atacctcatctaatcctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442344 |
atacctcatctaatcctccatcattttctgcagaatctctcttaaataattctccttatacaaaaatgaacccttcaaatcattgtcatcctcaacgtat |
8442443 |
T |
|
| Q |
218 |
ttgtttccatgttttacgcctctttacatgaattataccatattttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442444 |
ttgtttccatgttttacgcctctttacatggattataccatattttgcgcttaacagtcggcaaattgcattcactttacagaaggtcaaccaagttatt |
8442543 |
T |
|
| Q |
318 |
tcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442544 |
tcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctatt |
8442643 |
T |
|
| Q |
418 |
ctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagca-------- |
509 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442644 |
ctttcaactatcttgaattctagagtgcctaacatgctaaatttcaaaatctgaagaccaactcataccttccaatgctgctaaatttagcatcactaat |
8442743 |
T |
|
| Q |
510 |
--tcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaatt |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442744 |
attcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaatt |
8442818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 593
Target Start/End: Original strand, 8348555 - 8348659
Alignment:
| Q |
489 |
ccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaattctccta |
588 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||| |||||||||| |
|
|
| T |
8348555 |
ccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaatcagtgtatcacagaccactggcaatttcttcgaattctccta |
8348654 |
T |
|
| Q |
589 |
tgcta |
593 |
Q |
| |
|
||||| |
|
|
| T |
8348655 |
tgcta |
8348659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 304 - 492
Target Start/End: Complemental strand, 7915665 - 7915473
Alignment:
| Q |
304 |
tcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagt----tta |
399 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||| |||| |||| |||||||| ||| | ||| |
|
|
| T |
7915665 |
tcaaccatgttatttcaaaaatccctttaaacttatagaatgccccaaaacataattaatatgaaaagtagaaagtccacttt--ttaaatttattctta |
7915568 |
T |
|
| Q |
400 |
tcctctatcaagtctattctttcaactatcttcaat--tctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaa |
492 |
Q |
| |
|
|||||||||||| ||| ||||||| | |||| ||| | |||||||| || ||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7915567 |
acctctatcaagtgtatcctttcaattgtcttgaattgtatagagtgcagaacatgctaaatttcaaaatctcaagaccaactcataccttccaa |
7915473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 261 - 484
Target Start/End: Original strand, 8364280 - 8364505
Alignment:
| Q |
261 |
tttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaatt |
360 |
Q |
| |
|
|||| |||||| || ||||||||||| |||||||| || || ||| |||||||||| | ||| | |||| |||||| || |||| ||| |||||||| |
|
|
| T |
8364280 |
tttgtgcctaaaaggtggcaaattgcgttcactttccaatagttcagccaagttattcccaaagtcgcttttaacttacagaatgctccataacaaaata |
8364379 |
T |
|
| Q |
361 |
aacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgc |
454 |
Q |
| |
|
|||||||||||||||| ||||| ||| | ||||||||| |||||||||||| ||||||||||||| || |||| ||||||||| || |||| |
|
|
| T |
8364380 |
aacatgataagttgaagttccagtttttg--aaagtttattcttaacctctatcaagtgtattctttcaactgtcg--aattgtagagtgccgaacatgc |
8364475 |
T |
|
| Q |
455 |
taaatttcaaaatttgaagaccaactcata |
484 |
Q |
| |
|
||||||||||||| | |||||||||||||| |
|
|
| T |
8364476 |
taaatttcaaaatctcaagaccaactcata |
8364505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 590
Target Start/End: Original strand, 8409801 - 8409904
Alignment:
| Q |
486 |
cttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaattctc |
585 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| | || |||||||||||||| |||||| ||| |||||| |||||||||||||||| |
|
|
| T |
8409801 |
cttccaatgctgctaaatttagcatcgctatagccggtatttggcttc-ctttgtactaaacagcgtatcacagaccactggcaatttcttcaaattctc |
8409899 |
T |
|
| Q |
586 |
ctatg |
590 |
Q |
| |
|
||||| |
|
|
| T |
8409900 |
ctatg |
8409904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 486 - 548
Target Start/End: Complemental strand, 7915374 - 7915312
Alignment:
| Q |
486 |
cttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaaca |
548 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
7915374 |
cttccaatgctgctaaatttagcatcgctatagccggtatttggcatgattttgtactaaaca |
7915312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 328 - 484
Target Start/End: Original strand, 8348331 - 8348494
Alignment:
| Q |
328 |
ctttaaacttataggatgccccaaaacaaaattaacatgata--agttgaaattccactttccggaaaagtttat------cctctatcaagtctattct |
419 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||| |||||| ||||| |||||| |||||| |
|
|
| T |
8348331 |
cttttaacttatagaatgccccaaaacaaaattaacctgatataagttgaaattccacatttttgaaa-gtttattcgtaacctctttcaagtgtattct |
8348429 |
T |
|
| Q |
420 |
ttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcata |
484 |
Q |
| |
|
||||||| ||| |||| |||||| || || |||||||| |||||||| | |||||||||||||| |
|
|
| T |
8348430 |
ttcaactgtctcgaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata |
8348494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 35250629 - 35250525
Alignment:
| Q |
23 |
taccagttcaccaacacatcctaatattcctcctataagtagtcacagtgat---aatcgaaatgatacaattgtgactattttcacttctcaagatgat |
119 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||| || |||||||| |||| ||| ||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
35250629 |
taccggttcaccaactcatcataatattcctcctgaaaatagtcacaatgatgataattcaaatgatacaattgtgactatttctactcctgaagatgat |
35250530 |
T |
|
| Q |
120 |
acctc |
124 |
Q |
| |
|
|||| |
|
|
| T |
35250529 |
gcctc |
35250525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 69709 - 69161
Alignment:
| Q |
18 |
atatctaccagttcaccaacacatcctaatattcctcctataagtagtcacagtgataatcgaaatgatacaattgtgactattttcacttctcaagatg |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
69709 |
atatctaccggttcaccaacacatcctaatattcctcctataaatagtcacaatgataattgaaatgatacaattgtgactatttccacttctcaagatg |
69610 |
T |
|
| Q |
118 |
atacctcatctaatcctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtat |
217 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69609 |
atacctcatataatcctccatctttttcagcataatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtat |
69510 |
T |
|
| Q |
218 |
ttgtttccatgttttacgcctctttacatgaattataccatattttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69509 |
ttgtttccatgttttacgcctctttccatggattataccatattttgcgcctaacagttggaaaattgcattcactttacagaaggtcaaccaagttatt |
69410 |
T |
|
| Q |
318 |
tcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctatt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
69409 |
tcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccagaaaagtttatcctctatcaagtctatt |
69310 |
T |
|
| Q |
418 |
ctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagcatcactata |
517 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69309 |
ctttcaactatcttgaattctagagtgcctaacatgctaaatttcaaaatctcaagaccaactcataccttccaatgctgctaaatttagcatcactata |
69210 |
T |
|
| Q |
518 |
accggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69209 |
accggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
69161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 348 - 481
Target Start/End: Complemental strand, 65443 - 65306
Alignment:
| Q |
348 |
ccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattctttcaactatcttcaattctaga |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||| ||||||||||||| |||| |||| |||| |
|
|
| T |
65443 |
ccaaaacaaaattaacatgataagttgaaattccagtttttg--aaagtttattcttaacctctatcaagtttattctttcaactgtcttaaattgtaga |
65346 |
T |
|
| Q |
442 |
gtgcctaaaatgctaaatttcaaaatttgaagaccaactc |
481 |
Q |
| |
|
|||||||| |||||| |||||||||| | || |||||||| |
|
|
| T |
65345 |
gtgcctaacatgctatatttcaaaatctcaaaaccaactc |
65306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 788 - 230
Alignment:
| Q |
18 |
atatctaccagttcaccaacacatcctaatattcctcctataagtagtcacagtgataatcgaaatgatacaattgtgactattttcacttctcaagatg |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
788 |
atatctaccggttcaccaacacatcctaatattcctcctataaatagtcacaatgataattgaaatgatacaattgtgactatttccacttctcaagatg |
689 |
T |
|
| Q |
118 |
atacctcatctaatcctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtat |
217 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688 |
atacctcatataatcctccatctttttcagcataatctctcttaaataattctccttttacaaaaatgaacccttcaaatcattgtcatcctcaacgtat |
589 |
T |
|
| Q |
218 |
ttgtttccatgttttacgcctctttacatgaattataccatattttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
588 |
ttgtttccatgttttacgcctctttccatggattataccatattttgcgcttaacagtcggcaaattgcattcactttacagaaggtcaaccaagttatt |
489 |
T |
|
| Q |
318 |
tcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctatt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
488 |
tcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttcctgaaaagtttatcctctatcaagtctatt |
389 |
T |
|
| Q |
418 |
ctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagcatc------ |
511 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
388 |
ctttcaactatcttgaattctagagtgcctaacatgctaaatttcaaaatctcaagaccaactcataccttccaatgctgctaaatttagcatcactaat |
289 |
T |
|
| Q |
512 |
----actataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
288 |
attcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 985796 - 985606
Alignment:
| Q |
28 |
gttcaccaacacatcctaatattcctcctataagtagtcacagtgataatcgaaatgatacaattgtgactattttcacttctcaagatgatacctcatc |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||| |||| || |||||||| ||||||| |
|
|
| T |
985796 |
gttcaccaactcatcctaatattcctcctgaaaatagtcacaatgataattcaaatgatacaattgtgactatttccactcctgaagatgatgcctcatc |
985697 |
T |
|
| Q |
128 |
taatcctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
985696 |
taatcctccatcattttctgcagaatctctctcaaataatcctccttctacagaaatgaaccctccaaatcatcgtcattctcaacgtatt |
985606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 28 - 218
Target Start/End: Original strand, 1999227 - 1999417
Alignment:
| Q |
28 |
gttcaccaacacatcctaatattcctcctataagtagtcacagtgataatcgaaatgatacaattgtgactattttcacttctcaagatgatacctcatc |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||| |||| || |||||||| ||||||| |
|
|
| T |
1999227 |
gttcaccaacccatcctaatattcctcctgaaaatagtcacaatgataattcaaatgatacaattgtgactatttccactcctgaagatgatgcctcatc |
1999326 |
T |
|
| Q |
128 |
taatcctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatt |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
1999327 |
taatcctccgtcattttctgcagaatctctctcaaataatcctccttctacagaaatgaaccctccaaatcatcgtcattctcaacgtatt |
1999417 |
T |
|
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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 563
Target Start/End: Complemental strand, 44460390 - 44460350
Alignment:
| Q |
523 |
tatttgacatcattttgtactaaacagtgtatcatagaaca |
563 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
44460390 |
tatttgacaacattttgtactaaatagtgtatcatggaaca |
44460350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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