View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_60 (Length: 236)
Name: NF21245_low_60
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8252135 - 8251914
Alignment:
| Q |
1 |
ttagaacattgcattataataactaaaactatatgctcataactaaaactagaaaagtaagaagactgtaatgggtactcaaatccaagcaagagagtgg |
100 |
Q |
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| T |
8252135 |
ttagaacattgcattataataactaaaactatatgctcataactaaaactagaaaagtaagaagactgtaatgggtactcaaatccaagcaagagagcgg |
8252036 |
T |
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| Q |
101 |
----------nnnnnnnnnntgaagataagtaacaaaatattttccttaaggatcttaagaatcctttggtttttgccttgatttcaatcttctaagatg |
190 |
Q |
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| T |
8252035 |
aaaaaaaaaaaaaaaagtgatgaagataagtaacaaaatattttc---------cttaagaatcttttggtttttgccttgatttcaatcttctaagatg |
8251945 |
T |
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| Q |
191 |
taataaaaacctgagagagttgtgtgtatga |
221 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8251944 |
taataaaaacctgagagagttgtgtgtatga |
8251914 |
T |
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