View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_low_63 (Length: 223)
Name: NF21245_low_63
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 7940241 - 7940431
Alignment:
| Q |
19 |
agtcattacctgtatttctatggacatggtgttctttcatactaatattaaattttgggaatatgttgttgatttttaatcttttgtaattggtatcagg |
118 |
Q |
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| T |
7940241 |
agtcattacctgtatttctatgtacatggtggtctttcataataatatgaaattgtgggaatatattgttggtttttaatcttttgtaattggtatcagg |
7940340 |
T |
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| Q |
119 |
atttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaagtcaatcaagttggatattatacctggtaattattatttttcaat |
209 |
Q |
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| T |
7940341 |
atttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaagtcagtcaagttggatattatacctggtaattattatttttcaat |
7940431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 7927676 - 7927788
Alignment:
| Q |
91 |
tttttaatcttttgtaattggtatcaggatttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaagtcaatcaagttggata-ttatacct |
189 |
Q |
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| T |
7927676 |
tttttaatcttttgttgttggtatcagagtttctgcaagtcttgccaaggtgccaaagttgtaaaaggaacaaagtcagtcaagttgcatacttat-cct |
7927774 |
T |
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| Q |
190 |
ggtaattattattt |
203 |
Q |
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| T |
7927775 |
ggtaattattattt |
7927788 |
T |
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