View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21246_high_3 (Length: 454)
Name: NF21246_high_3
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 55017541 - 55017117
Alignment:
| Q |
11 |
cacagacacatggaatcttgttacataaacaaaaattaataatttgatactagtattatacatttaaaccagcaatattaatcaccaccaaaatgaaaaa |
110 |
Q |
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| T |
55017541 |
cacacacacatggaatcttgttacataaacaaaaattaataatttgatactagtattatacatttaaaccagcaatattaatcaccaccaaaaagaaaaa |
55017442 |
T |
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| Q |
111 |
taaacaatgaacaaacccctgaattaccagtcttatggagtactaaatactcttaatttagttaacaaattactagcattgtagtatgcaaaagaaaata |
210 |
Q |
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| T |
55017441 |
taaacaatgaacaaacccctgaattaccagtcttatggagtactaaatactcttaatttagttaacaaattactagcattgcaatatgcaaaagaaaata |
55017342 |
T |
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| Q |
211 |
ataccatgtaaatgataaagtatttgtaagtgtaacaacttaaattgatctaggaacaataactgccttgagaggattcttcataacaacagtgaaagca |
310 |
Q |
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| T |
55017341 |
ataccatgtaaatgataaagtatttgtaagtgtaacaacttaaattgatctaggaacaataactgccttgagaggattcttcataacaacagtgaaagca |
55017242 |
T |
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| Q |
311 |
aatgtctctgttgggtcgggtggggaatttggaaccggcaaccacctaaaagcaagaaccatttttgccaacaacatgtttatatgcaaagtccctaatg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55017241 |
aatgtctctgttgggtcgggtggggaatttggaaccggcaaccacctaaaagcaagaaccattttggccaacaacatgtttatatgcaaagtccctaatg |
55017142 |
T |
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| Q |
411 |
tccatgctggacaaatcctcctccc |
435 |
Q |
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| T |
55017141 |
tccatgctggacaaatcctcctccc |
55017117 |
T |
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