View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21246_high_4 (Length: 411)
Name: NF21246_high_4
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_high_4 |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 21834030 - 21834383
Alignment:
| Q |
15 |
aatcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaaga |
114 |
Q |
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| T |
21834030 |
aatcatgtagatctaaaagttttcatggacatttctaaaaataattaaacccatattttagtaatttttgtaaactacactgagtaattcaaacctaaga |
21834129 |
T |
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| Q |
115 |
acaagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcggaagttggaggatacatgtgt |
214 |
Q |
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| T |
21834130 |
acaagatctacaccaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcagaagttggaggatacatgtgt |
21834229 |
T |
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| Q |
215 |
tagcagaattgatttcaaatcatatcaaactaggaaactatgcctgttcatttggactgtcaatattaacttcttaaaccacttcccacctataagcctg |
314 |
Q |
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| T |
21834230 |
cagcagaattgatttcaaatcatatcaaactaggaaactatgtctgttcatttggactttcagtattaacttcttaaaccacttttcacctataagcctg |
21834329 |
T |
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| Q |
315 |
aatgaaaaattaactgcaattaatgggtacattatgaacagttaacgatggaat |
368 |
Q |
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| T |
21834330 |
aatgaagaattaactgcaattaatggttacattatgaacagtaaacgatggaat |
21834383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 110 - 370
Target Start/End: Complemental strand, 13304 - 13044
Alignment:
| Q |
110 |
taagaacaagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcggaagttggaggataca |
209 |
Q |
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| T |
13304 |
taagaacaagatctacaccaggaatcaatctaactataatattacccatggttactttgcaattcatacgtggaaggcacttcagaagttggaggatata |
13205 |
T |
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| Q |
210 |
tgtgttagcagaattgatttcaaatcatatcaaactaggaaactatgcctgttcatttggactgtcaatattaacttcttaaaccacttcccacctataa |
309 |
Q |
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| T |
13204 |
tgtgttagcagaattgatttcaaatcatatcaaactaggaaactatgtctgttcatttggactttcagtattaacttcttaaaccacttttcacctataa |
13105 |
T |
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| Q |
310 |
gcctgaatgaaaaattaactgcaattaatgggtacattatgaacagttaacgatggaatga |
370 |
Q |
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| T |
13104 |
acctgaatgaagaattaaatgcaattaatggttacattataaacagtaaacgattgaatga |
13044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 13602 - 13503
Alignment:
| Q |
15 |
aatcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaaga |
114 |
Q |
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| T |
13602 |
aatcatgtagatctaaaagttttgatggagatttctaaaaataattgaacccatattttagtaatttttgtaaactacactgagtaattcaaatctaaga |
13503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 22069085 - 22068886
Alignment:
| Q |
13 |
aaaatcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaa |
112 |
Q |
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| T |
22069085 |
aaaatcatgtagatctaaaagttttcatggacatttctaaaaataattgaactcatattttagtaatttttgtaaactacaaggagtaattcaaatctaa |
22068986 |
T |
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| Q |
113 |
gaacaagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcggaagttggaggatacatgt |
212 |
Q |
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| T |
22068985 |
gaacaagatctacaccaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcagaagttggaggatacatgt |
22068886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 241 - 370
Target Start/End: Complemental strand, 22068655 - 22068526
Alignment:
| Q |
241 |
aaactaggaaactatgcctgttcatttggactgtcaatattaacttcttaaaccacttcccacctataagcctgaatgaaaaattaactgcaattaatgg |
340 |
Q |
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| T |
22068655 |
aaactatgaaactatgtctgtttatttggactgtcaatattaacttcttaaaccacttcccacctataagcctgaatgaagaattaactgcaattaatgg |
22068556 |
T |
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| Q |
341 |
gtacattatgaacagttaacgatggaatga |
370 |
Q |
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| T |
22068555 |
ttacattatgaacagttaacgatggaatga |
22068526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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