View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21246_high_5 (Length: 370)
Name: NF21246_high_5
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 39381281 - 39381643
Alignment:
| Q |
1 |
ctttctgctttcacttaacttgtctattacactcnnnnnnnc----caaaaaatatagttgttagtttcattttagagttttaagaccatgtatggtata |
96 |
Q |
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||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39381281 |
ctttctgctttcacttaacttgtctgttacactcttttttactgtccaaaaaatatagttgttagtttcattttagagttttaagaccatgtatggtata |
39381380 |
T |
|
| Q |
97 |
cctctcaaattgagacatgggccgctatattaacgcaactgcgattgaggctgtatcagcgtgattctatgcaatatcaataattgcaatcgagaccatt |
196 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
39381381 |
cctctcaacttgaaacatgggccgctatattaacgcaactgcgattgaggctgtatcagcatgattctatgcaatatcaataattgtaatcgagaccatt |
39381480 |
T |
|
| Q |
197 |
acttccattgcaatttaaaaatttgataatagtgtaaaccggtttcacacttacatgacgataagcgtaaatcagctttacacatttataatgggagtca |
296 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
39381481 |
acttccattgcaatttaaaaatttgatattagtgtaaaccggtttcacacttacatgatgataagtgtaaatcagctttacgcatttataatgggagtca |
39381580 |
T |
|
| Q |
297 |
actattttgtcacgcgagtccacctttgtaactacatcttgaatttaacgatattatgatgat |
359 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39381581 |
actattttgtcacgtgagtccacctttgtaactacatcttgaatttaacgatattatgatgat |
39381643 |
T |
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