View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21246_high_7 (Length: 306)
Name: NF21246_high_7
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 39381005 - 39381281
Alignment:
| Q |
22 |
agagcttatgtaaataagttcaaaattgtttatggacatgtaataataaataagttgtttctataaactctcttaaagagattcccaaatacttatgcta |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
39381005 |
agagcttatgtaaataagttcaaaattgtttatggacatttaataataaataagttgtttctataaactctcttaaagatattcacaaatacttatgcta |
39381104 |
T |
|
| Q |
122 |
gtaggtaatctcaaataaatcggtttaaatagacacttactatcttgattcaataatctgtttctacaggttctgctaacagcatgctctctactcaaca |
221 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39381105 |
gtaggtaatctcaaataagtcggtttaaatatacacttactatcttgattcaataatctgtttctgcaggttctgctaacagcatgctctctactcaaca |
39381204 |
T |
|
| Q |
222 |
tgtttcccatgctaacaaattcgtcaatgacctcactcattccgacatgtaaccccttttacctccattttcatctc |
298 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39381205 |
tgtttcccatgctaacaaattcatcaatgacctcactcattccgacatgtaaccccttttacctccattttcatctc |
39381281 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 6987783 - 6987738
Alignment:
| Q |
22 |
agagcttatgtaaataagttcaaaattgtttatggacatgtaataa |
67 |
Q |
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|||||||||| ||||||||| ||||| |||||||||||||| |||| |
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| T |
6987783 |
agagcttatggaaataagttgaaaatagtttatggacatgtcataa |
6987738 |
T |
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