View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21246_low_1 (Length: 684)
Name: NF21246_low_1
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 5878965 - 5878463
Alignment:
| Q |
1 |
atattatttcaatagaatttaaatgataagaataaaatatgggttgtaagagagtgatatcctttaaaatcctaacctggagatttatctttggttgcaa |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5878965 |
atattatttcaatagaatttgagtgataagaataaaatatgggttgtaagagagtgatatcctttaaaaccctaacctggagatttatctttggttgcaa |
5878866 |
T |
|
| Q |
101 |
ccctttttcatttcctacaaacaatttaattaatttgtgaatctttacacatacaaaaaatgggtatattaccttaaaatcggataatctaaatttaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5878865 |
tcctttttcatttcctacaaacaatttaattaatttgtgaatctttacacatacaaaaaatgggtatattaccttaaaatcggataatctaaatttaagt |
5878766 |
T |
|
| Q |
201 |
tcagtattttttaaagtacacaattaaaattaaatctatgactttttaaccatcaaatctatatggggtggtcattgatgtcccgactaccgactaggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5878765 |
tcagtattttttaaagtacacaattaaaattaaatctatgactttttaaccatcaaatctatatggggtggtcattgatgtcccgattaccgactaggtg |
5878666 |
T |
|
| Q |
301 |
aaaacaaatttctatatgcttaagccatgagttatgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaat |
400 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5878665 |
acaacaaatttctatatgcttaagcgatgagttgtgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaat |
5878566 |
T |
|
| Q |
401 |
ataaaattcgtttgattgaaactcttgatgttgaaccaaccactacaaaga-tttatttataacataatttttgttattttgtcgaccgactaataattg |
499 |
Q |
| |
|
|||| ||| ||||||||||||| | |||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
5878565 |
gtaaatttcatttgattgaaactttggatgttcaaccaaccactacaaagattttatttataacattatttttgttattttatcgaccgacttataattg |
5878466 |
T |
|
| Q |
500 |
caa |
502 |
Q |
| |
|
||| |
|
|
| T |
5878465 |
caa |
5878463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 561 - 669
Target Start/End: Complemental strand, 5878417 - 5878309
Alignment:
| Q |
561 |
ggtaccttcctgagaaactcatgggcttggttaacttgtatcaaatcgcttcgtttagcacccaattttgtggtggcataagtgaagcctgtggaaacag |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5878417 |
ggtaccttcctgagaaactcatgggcttggttaacttgtatcaaatcgcttcgtttagcaccagattctgtggtggcataagtgaagcctgtggaaacag |
5878318 |
T |
|
| Q |
661 |
gcaaatctg |
669 |
Q |
| |
|
||||||||| |
|
|
| T |
5878317 |
gcaaatctg |
5878309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 330 - 478
Target Start/End: Complemental strand, 5865392 - 5865244
Alignment:
| Q |
330 |
agttatgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaatataaaattcgtttgattgaaactcttgat |
429 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||| |
|
|
| T |
5865392 |
agttttgtaccttctgcaattttttgaacaatgacaggaataggaatgccagagtatgaatcaccagcaatgtaaacttcgtttgattgaaactttggat |
5865293 |
T |
|
| Q |
430 |
gttgaaccaaccactacaaagatttatttataacataatttttgttatt |
478 |
Q |
| |
|
| | |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5865292 |
gatcaaccaaccactacaaagatttatttatagcataatttttgttatt |
5865244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 326 - 471
Target Start/End: Complemental strand, 5858707 - 5858562
Alignment:
| Q |
326 |
catgagttatgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaatataaaattcgtttgattgaaactct |
425 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | |
|
|
| T |
5858707 |
catgaattttgtaccttgtgcaatttcttgaacaacgacaggaataggaatgccagagtatgaatcaccagcaatgtaaacttcgtttgattgaaacttt |
5858608 |
T |
|
| Q |
426 |
tgatgttgaaccaaccactacaaagatttatttataacataatttt |
471 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5858607 |
ggatgatcaaccaaccactacaaagatttatttataaaataatttt |
5858562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 5858855 - 5858798
Alignment:
| Q |
67 |
aaatcctaacctggagatttatctttggttgcaaccctttttcatttcctacaaacaa |
124 |
Q |
| |
|
|||| |||||||||||||||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
5858855 |
aaattctaacctggagatttatccatggttggacccctttttcatttcctacaaacaa |
5858798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 593 - 668
Target Start/End: Complemental strand, 5865161 - 5865086
Alignment:
| Q |
593 |
aacttgtatcaaatcgcttcgtttagcacccaattttgtggtggcataagtgaagcctgtggaaacaggcaaatct |
668 |
Q |
| |
|
|||| ||||| | |||||||| |||| ||| ||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5865161 |
aactagtatcgagtcgcttcgcttagtaccggattctgttgtggcataagtgaagcctgtggaaaccggcaaatct |
5865086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 5865529 - 5865456
Alignment:
| Q |
49 |
agagagtgatatcctttaaaatcctaacctggagatttatctttggttgcaaccctttttcatttcctacaaacaa |
124 |
Q |
| |
|
||||||||||| |||||| || || ||||||||||||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
5865529 |
agagagtgata--ctttaagatgctgacctggagatttatccatggttggactcctttttcatttcctacaaacaa |
5865456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 668
Target Start/End: Complemental strand, 5858412 - 5858377
Alignment:
| Q |
633 |
gtggcataagtgaagcctgtggaaacaggcaaatct |
668 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5858412 |
gtggcataagtgaagcctgtggaaaccggcaaatct |
5858377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University