View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21246_low_10 (Length: 237)
Name: NF21246_low_10
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 50843852 - 50843618
Alignment:
| Q |
1 |
gattgtgaaatgcttgaacaatactcacttaatgtccacacctcacatttgcaaaggaaacattttcaatgccttgcacaaattaatctagagataactt |
100 |
Q |
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| T |
50843852 |
gattgtgaaatgcttgaacaatactcacttaatgtccacacctcacatttgcaaaggaaacattttcaatgccttgcacaaattaatctagagataactt |
50843753 |
T |
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| Q |
101 |
ttttctgagatactgctgatgaaaataaagaggtctct-------------tggtgaaaaagataatttcattccactcgatgtccacagtccacaatat |
187 |
Q |
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| T |
50843752 |
ttttctgagatactgctgatgaaaataaagaggtctcttgggcaatacgaatggtgaaaaagataatttcattccactcgatgtccacagtccacaatat |
50843653 |
T |
|
| Q |
188 |
tgttaagaataacattttcatgtgcaacacaaatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
50843652 |
tgttaagaataacattttcatgtgcaacacaaatt |
50843618 |
T |
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