View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21246_low_2 (Length: 499)
Name: NF21246_low_2
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 36 - 488
Target Start/End: Original strand, 48656875 - 48657327
Alignment:
| Q |
36 |
tctaatcttggaaggtgtagctagtgagtgatgagtgagtgaaagtgatcgttccttcattttatgtattctaacaaacagtcaactggtattataaata |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48656875 |
tctaatgttggaaggtgtagctagtgagtgatgagtgagtgagagtgatcgttccttcattttatgtattctaacaaacagtcaactggtattataaata |
48656974 |
T |
|
| Q |
136 |
acattcatatttatctactatactatacttacgtactaaacaaactgtaaacagcatggctgaggaggaactggataaacctttgcttgatcctgacaat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48656975 |
acattcatatttatctactatactatacttacgtactaaacaaactgtaaacagcatggctgaggaggaactggataaacctttgcttgatcctgacaat |
48657074 |
T |
|
| Q |
236 |
ttcaaccgagagggcattgatttggtaactagctttcttcttgcattttcaacttcattttgtaatttttgcatttacatgttcttgacttcaggagcgc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48657075 |
ttcaaccgagagggcattgatttggtaactagctttcttcttgcattttcaacttcattttgtaatttttgcatttacatgttcttgacttcaggagcgc |
48657174 |
T |
|
| Q |
336 |
ataccactagaacaagttttcgaactgttgaaaacatcaccaggaggactttcatccgacgatgctgaagcccgacttcacatatttggcccaaacaaac |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48657175 |
ataccactagaacaagttttcgaactgttgaaaacatcaccaggaggactttcatccgacgatgctgaagcccgacttcacatatttggcccaaacaaac |
48657274 |
T |
|
| Q |
436 |
tcgaagagaggaaagtaagaccccttatcctatgaagcaacatatacagaatt |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48657275 |
tcgaagagaggaaagtaagaccccttatcctatgaagcaacatatacagaatt |
48657327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University