View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21246_low_8 (Length: 283)
Name: NF21246_low_8
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 17344758 - 17345021
Alignment:
| Q |
3 |
gaagaatatgccctgaaaatgttaacttatgggtgtaagattnnnnnnnnnnngataaattgaaattaattagaataaacctttcaattcaaattggccg |
102 |
Q |
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| T |
17344758 |
gaagaatatgccctgaaaatgtaaacttatgggtgtaagattaaaaaaaaaa-gataaattgaaatttataagaaaaaacctttcaattcaaattggccg |
17344856 |
T |
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| Q |
103 |
gtaaatcaatttaacatagtttctttgtannnnnnnnct-ccaataaatatattcatcgaataagtgataagctagcaaattggccgttgtggttttaag |
201 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17344857 |
gtaaatcaatttaacatagtttctttgtattttttttcttccaataaatatattcatcgaataagtgataagctagcaaattggccgttgtggttttaag |
17344956 |
T |
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| Q |
202 |
tcttatacagaaagctattgaaatctagctcattcaagaagtttacgaatttctaaatcagaaaa |
266 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17344957 |
tcttatacaaaaagctattgaaatctagctcattcaagaagtttacgaatttctaaatcagaaaa |
17345021 |
T |
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