View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21246_low_9 (Length: 254)
Name: NF21246_low_9
Description: NF21246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21246_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 34789874 - 34790092
Alignment:
| Q |
20 |
agagagatctttagctgagaccgaacgagctagagcaatatttgagcttgcaattgcccaaccagcactggacatgcctgagttgttgtggaaggtacac |
119 |
Q |
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| T |
34789874 |
agagagatctttagctgagaccgaacgagctagagcaatatttgagcttgcaattgcccaaccagcactggacatgcctgagttgttgtggaaggtacac |
34789973 |
T |
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| Q |
120 |
ataaaatttatttctttattgtacaaaagccaaatcgtagcatttattgcctatggaagcttctaatgtgatttctctttctcttttgttgtcatcttct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34789974 |
ataaaatttatttctttattgtacaaaagccaaatcgtagcatttattgcctatggaagcttctaatgtgatttctctttctcttttgttgtcatcttct |
34790073 |
T |
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| Q |
220 |
gatgcataccacatctatg |
238 |
Q |
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||||||||||||||||||| |
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| T |
34790074 |
gatgcataccacatctatg |
34790092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 2289062 - 2288943
Alignment:
| Q |
20 |
agagagatctttagctgagaccgaacgagctagagcaatatttgagcttgcaattgcccaaccagcactggacatgcctgagttgttgtggaaggtacac |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2289062 |
agagagatctttagctgagactgaacgagctagagcaatatttgagcttgcaattgcccaaccagcattggacatgcctgagttgttgtggaaggtacac |
2288963 |
T |
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| Q |
120 |
ataaaatttatttctttatt |
139 |
Q |
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||||||||||||| |||||| |
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| T |
2288962 |
ataaaatttatttatttatt |
2288943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 2288726 - 2288671
Alignment:
| Q |
183 |
taatgtgatttctctttctcttttgttgtcatcttctgatgcataccacatctatg |
238 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
2288726 |
taatgtgatttctctttctcctttgttgtcatcttctgatgcataccatatctatg |
2288671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 49276046 - 49275991
Alignment:
| Q |
21 |
gagagatctttagctgagaccgaacgagctagagcaatatttgagcttgcaattgc |
76 |
Q |
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|||||||||||| | ||||| |||||||||||||||||||||||| ||||||||| |
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| T |
49276046 |
gagagatctttatcagagactgaacgagctagagcaatatttgagtctgcaattgc |
49275991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 49279603 - 49279548
Alignment:
| Q |
21 |
gagagatctttagctgagaccgaacgagctagagcaatatttgagcttgcaattgc |
76 |
Q |
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|||||||||| | ||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
49279603 |
gagagatcttcatctgagactgaacgagctagagcaatatttgagtctgcaattgc |
49279548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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