View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21247_high_2 (Length: 454)
Name: NF21247_high_2
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 87 - 442
Target Start/End: Original strand, 36986899 - 36987254
Alignment:
| Q |
87 |
cagaaggaagcttcttatatatatctgaatctcataaaatgttttgcaggtaattatttctattaacctgaaacaccttgcttatataatataaatgtca |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36986899 |
cagaaggaagcttcttatatatatctgaatctcataaaatgttttgcaggtaattatttctactaacctgaaacaccttgcttatataatataaatgtca |
36986998 |
T |
|
| Q |
187 |
tctttctatgaagaaaataatcgattgaagctggaagctcaagaatttgcttgtatatttgatgaaaaatctactgttcaggaattgcctccaaaggtaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
36986999 |
tctttctatgaagaaaataatcgattgaagctggaagctcaagaatttgcttgtatatttgatgaaaaatctactattcaggatttgcctccaaaggtaa |
36987098 |
T |
|
| Q |
287 |
atatgcttttgtttttccttatcctaaagagagatgtctgaatggaagtcaatatttttcatttgactaatttgttgcgtagcttgttgatcatttgact |
386 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36987099 |
atttgctcttgtttttccttatcctaaagagagatgtctgaatggaagtcaatatttttcatttgactaattggttgcgtagcttgttgatcatttgact |
36987198 |
T |
|
| Q |
387 |
atttttcatatgagtcgacattatattcttttgttttctttctagatctatttgat |
442 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36987199 |
atttttcatatgagtctacattatattcttttgttttctttctagatctatttgat |
36987254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University